Locus 7526

Sequence ID 3L_DroMel_CAF1
Location 20,225,415 – 20,225,512
Length 97
Max. P 0.973606
window12235

overview

Window 5

Location 20,225,415 – 20,225,512
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 95.05
Mean single sequence MFE -26.80
Consensus MFE -26.26
Energy contribution -26.22
Covariance contribution -0.04
Combinations/Pair 1.05
Mean z-score -1.43
Structure conservation index 0.98
SVM decision value 1.71
SVM RNA-class probability 0.973606
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20225415 97 - 23771897
CCGGGGCUAUAGUCUCGAAUGGAUGCCAAAGCGACUCUCCGAUUGCCCACCACUUUGAGGAUUCGACAGGCAUUCAAAUGCCUUCCCCUCAUCCAAU
.((((((....))))))..((((((.....((((.((..(((............)))..)).))).)((((((....))))))......)))))).. ( -27.30)
>DroSec_CAF1 38901 97 - 1
CCGGGGCUAUAGUCUCGAAUGGAUGCCAAAGCGACUCUCCGAUUGCCCACCACUUUGAGGAUUCGACAGGCAUUCAAAUGCCUUUCCCUCAGCCAAU
.((((((....))))))..(((........((((........))))........((((((....((.((((((....)))))).))))))))))).. ( -26.30)
>DroSim_CAF1 34311 97 - 1
CCGGGGCUAUAGUCUCGAAUGGAUGCCAAAGCGACUCUCCGAUUGCCCACCACUUUGAGGAUUCGACAGGCAUUCAAAUGCCUUUCCCUCAGCCAAU
.((((((....))))))..(((........((((........))))........((((((....((.((((((....)))))).))))))))))).. ( -26.30)
>DroEre_CAF1 35081 95 - 1
CCGGGGCUACAGUCCCGAAUGGUUGCCAGAGCGACUCUCCGAUUGCCCACCACUUUGAGGAUUCGACAGGCAUUCAAAUGCU-CUC-CUCAUCCAAU
.((((((....))))))..(((.((..((((((......)((.((((.......(((......)))..)))).))....)))-)).-..)).))).. ( -25.60)
>DroYak_CAF1 47884 96 - 1
CCGGGGCUAUAGUCCCGAAUGGAUGCCAAAGCGACUCUCCGAUUGCCCACCACUUUGAGGAUUCGACAGGCAUUCAAAUGCU-UUCCCUCAUCCAAU
.((((((....))))))..((((((((....(((.((..(((............)))..)).)))...))))))))......-.............. ( -28.50)
>consensus
CCGGGGCUAUAGUCUCGAAUGGAUGCCAAAGCGACUCUCCGAUUGCCCACCACUUUGAGGAUUCGACAGGCAUUCAAAUGCCUUUCCCUCAUCCAAU
.((((((....))))))..((((((((....(((.((..(((............)))..)).)))...))))))))..................... (-26.26 = -26.22 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:26 2006