Locus 7525

Sequence ID 3L_DroMel_CAF1
Location 20,224,603 – 20,224,697
Length 94
Max. P 0.523760
window12234

overview

Window 4

Location 20,224,603 – 20,224,697
Length 94
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 83.86
Mean single sequence MFE -22.96
Consensus MFE -14.33
Energy contribution -14.82
Covariance contribution 0.49
Combinations/Pair 1.05
Mean z-score -1.83
Structure conservation index 0.62
SVM decision value -0.02
SVM RNA-class probability 0.523760
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20224603 94 - 23771897
GUUUUUAGUUCGGCUAAAUGCAAUUGUGGCCACUUCUUGCACUCCCUGCACUUCCUGCCAACGCACGUGGCCCACUCGACUG--CCUUCAAUUGCC
...(((((.....))))).(((((((.((((((....((((.....)))).....(((....))).))))))..........--....))))))). ( -22.66)
>DroSec_CAF1 38096 96 - 1
GUUUUUAGUUCGGCUAAAUGCAAUUGUGGCCACUUCUUGCACUCCCUGCACUUCCUGCCAGCGCACUUGGCCCACUCGACUGCGCCUUCAAUUGCC
...(((((.....))))).(((((((((((.......((((.....))))......))))(((((.((((.....)))).)))))...))))))). ( -26.42)
>DroSim_CAF1 33513 96 - 1
GUUUUUAGUUCGGCUAAAUGCAAUUGUGGCCACUUCUUGCACUCCCUGCACUUCCUGCCAACGCACUUGGCCCACUCGACUGCGCCUUCAAUUGGC
((..(((((..((((((.(((.....((((.......((((.....))))......))))..))).)))))).))).))..))(((.......))) ( -24.02)
>DroEre_CAF1 34261 80 - 1
GUUUUUAGUUCGGCUAAAUGCAAUUGUGGCCACUUCUUGCACUCCCUGC--------------CACUUGGCCCACCCGACUG--CCUCGAAUUGCC
...(((((.....))))).(((((((((((((......(((.....)))--------------....))).)))).(((...--..))))))))). ( -17.40)
>DroYak_CAF1 47082 81 - 1
GUUUUUAGUUCGGCUAAAUGCAAUUGUGGCCACUUCUUGCACUCCCUGCACUUCCUGCCAACGCAUUUGGCCAGCCCGACU---------------
.......(((.((((((((((.....((((.......((((.....))))......))))..)))))))))))))......--------------- ( -24.32)
>consensus
GUUUUUAGUUCGGCUAAAUGCAAUUGUGGCCACUUCUUGCACUCCCUGCACUUCCUGCCAACGCACUUGGCCCACUCGACUG__CCUUCAAUUGCC
((.(((((.....))))).))....(((((((.....((((.....)))).....(((....)))..))))).))..................... (-14.33 = -14.82 +   0.49)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:25 2006