Locus 7524

Sequence ID 3L_DroMel_CAF1
Location 20,223,501 – 20,223,602
Length 101
Max. P 0.582360
window12233

overview

Window 3

Location 20,223,501 – 20,223,602
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 66.63
Mean single sequence MFE -16.08
Consensus MFE -6.94
Energy contribution -7.22
Covariance contribution 0.28
Combinations/Pair 1.14
Mean z-score -1.69
Structure conservation index 0.43
SVM decision value 0.10
SVM RNA-class probability 0.582360
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20223501 101 - 23771897
UAUAAAAUAAUUGUCUGCUUGCAAUUAUAAGUAGUUGAGUUAAAUGUGAUCUCAUGUAGCGAAAAACUGGCUAUGAAUAGUAACUUAAGUUUCUGCAACAC
......((((((((......))))))))..((((((((((((...(((....)))(((((.(.....).)))))......))))))))....))))..... ( -18.90)
>DroSec_CAF1 37030 85 - 1
UCUAAUAUAAAUGACUGCUUGCAAUUAUA-------------AAUGUGAUCUCCUUUAGCCAAAAACUGGCUAUGAAUAGUAACUAAAGCUU---CAACAC
...........(((..(((((((......-------------..))).........((((((.....)))))).............)))).)---)).... ( -12.40)
>DroSim_CAF1 32443 85 - 1
UCUAAUAUAAAUGACUGCUUGCACUUAUA-------------AAUGUGAUCUCCUAUAGCCAAAAACUGGCUAUGAAUAGUAACUAAAGCUU---CAACAC
...........(((..((((.(((.....-------------...)))......((((((((.....))))))))...........)))).)---)).... ( -16.90)
>DroEre_CAF1 33207 84 - 1
UAAAAUGUAAAUAUCUGA-GGCAAUUGAAAAGUGUUG------------AUUCUCAUAGCCAA-AACUGGCUAUAAAUAGUAACGAAAUCUU---CAACAC
..................-............((((((------------(.....(((((((.-...)))))))..........(....).)---)))))) ( -14.50)
>DroYak_CAF1 46023 89 - 1
UGUAAUAUAUGCAUUC------GCUUGAAAUGUGUUCAGUUAAAUGA--AUGCUCAUAGCCAA-AACUGGCUAUAAAAAGUACCUAAAUCUU---CAACAC
.(((......((((((------(.((((..((....)).)))).)))--))))..(((((((.-...)))))))......))).........---...... ( -17.70)
>consensus
UAUAAUAUAAAUGUCUGCUUGCAAUUAUAA___GUU______AAUGUGAUCUCCUAUAGCCAAAAACUGGCUAUGAAUAGUAACUAAAGCUU___CAACAC
.......................................................(((((((.....)))))))........................... ( -6.94 =  -7.22 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:24 2006