Locus 7523

Sequence ID 3L_DroMel_CAF1
Location 20,221,407 – 20,221,518
Length 111
Max. P 0.986162
window12232

overview

Window 2

Location 20,221,407 – 20,221,518
Length 111
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 91.12
Mean single sequence MFE -33.27
Consensus MFE -25.72
Energy contribution -27.28
Covariance contribution 1.56
Combinations/Pair 1.11
Mean z-score -2.88
Structure conservation index 0.77
SVM decision value 2.03
SVM RNA-class probability 0.986162
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20221407 111 - 23771897
CAGUUGAGAAUUGUAAUUAAUCUAAGCUGACUUGCGUUUUUUAAUACCAUCGCGAAAUGCAGACAAAGUCUUGGA----AGUGGGGCAACAUAUUGCCAUCCAAAGAGUUUGUCG
(((((.(((.(((....)))))).)))))...((((((((.............))))))))((((((.(((((((----.....(((((....))))).))).)))).)))))). ( -31.92)
>DroSec_CAF1 34936 115 - 1
CAGUUGAGAAUUGUAAUUAAUCUAAGCUGACUUGCGUUUUUUAAUACCAUCGCGAAAUGCAGACAAACUCUUGGAAGGAAGUGGGGCAACAUAUUGCCAUCCAAAGAGUUUGUCG
(((((.(((.(((....)))))).)))))...((((((((.............))))))))((((((((((((((.((.((((.(....).)))).)).))).))))))))))). ( -37.52)
>DroSim_CAF1 30326 115 - 1
CAGUUGAGAAUUGUAAUUAAUCUACGCUGACUUGCGUUUUUUAAUACCAUCGCGAAAUGCAGGCAAACUCUUGGAAGGAAGUGGGGCAACAUAUUGCCAGCCAAAGAGUUUGUCG
((((..(((.(((....))))))..))))...((((((((.............))))))))(((((((((((((..((.((((.(....).)))).))..)).))))))))))). ( -33.62)
>DroEre_CAF1 31172 109 - 1
CAGCGGAGAAUUGUAAUUAAUCUAAGCUGACUUGCGUUUUUUAAUACCAUCUAGAAACGCAGACAAAC--UCAGA----AGUGGAGCAACAUAUUGCCAUCCAAAGAGUUUGUCG
((((..(((.(((....))))))..))))...(((((((((...........)))))))))(((((((--((...----..((((((((....))))..))))..))))))))). ( -35.60)
>DroYak_CAF1 43856 111 - 1
CAGUUGGGAAUUGUAAUUAAUCUAAGCUGACUUGCGUUUUUUAAUACCAUCGAUAAAUGCAGACAAACCCUUGGA----AGUGGGACAACAUAUUGCUAUCCAAAGAGUUUGUCG
(((((.(((.(((....)))))).)))))...(((((((.(..((...))..).)))))))((((((((.(((((----((..(.........)..)).))))).).))))))). ( -27.70)
>consensus
CAGUUGAGAAUUGUAAUUAAUCUAAGCUGACUUGCGUUUUUUAAUACCAUCGCGAAAUGCAGACAAACUCUUGGA____AGUGGGGCAACAUAUUGCCAUCCAAAGAGUUUGUCG
(((((.(((.(((....)))))).)))))...((((((((.............))))))))((((((((((((((....((((.(....).))))....))).))))))))))). (-25.72 = -27.28 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:23 2006