Locus 7522

Sequence ID 3L_DroMel_CAF1
Location 20,217,278 – 20,217,373
Length 95
Max. P 0.999737
window12231

overview

Window 1

Location 20,217,278 – 20,217,373
Length 95
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 75.67
Mean single sequence MFE -19.62
Consensus MFE -11.18
Energy contribution -14.55
Covariance contribution 3.37
Combinations/Pair 1.14
Mean z-score -3.41
Structure conservation index 0.57
SVM decision value 3.97
SVM RNA-class probability 0.999737
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20217278 95 + 23771897
CACUUAAAACUCCAUUUCGCCACACA--------UAUAUAGCUAUGUGUGUAUAAACCUCGGUUACCUGGUGAAAUUCCCUUUCCCCCCACAUCCCCCCUUGU
.............(((((((((((((--------((((....)))))))))...(((....)))....))))))))........................... ( -19.00)
>DroSec_CAF1 31018 86 + 1
CACUUAAAACUCCAUUUCGCCACACACAUGUAGCUAUAUAGCUAUGUGUGUAUAUACCUCGGUUACCUGGUGGAAA-----------------CCCCCUUUUU
..............((((((((.((((((((((((....))))))))))))....((....))....)))))))).-----------------.......... ( -23.80)
>DroSim_CAF1 26358 86 + 1
CACUUAAAACUCCAUUUCGCCACACACAUAUAGCUAUAUAGCUAUGUGUGUAUACAACUCGGUUACCUGGUGGAAA-----------------CCCCCUUUUU
..............((((((((.((((((((((((....)))))))))))).........((...)))))))))).-----------------.......... ( -24.60)
>DroYak_CAF1 39773 82 + 1
CACUUAAAACUCCAUUUCGCCACACAUACG----UAUGUAAGUAUAUAGGUAUAUACCUCGGGUACCUGGUAACAU-----------------CCCCCUGUUU
..................((((...((((.----(((((....))))).)))).((((...))))..)))).....-----------------.......... ( -11.10)
>consensus
CACUUAAAACUCCAUUUCGCCACACACAUG____UAUAUAGCUAUGUGUGUAUAUACCUCGGUUACCUGGUGAAAA_________________CCCCCUUUUU
..............((((((((.((((((((((((....)))))))))))).........((...))))))))))............................ (-11.18 = -14.55 +   3.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:22 2006