Locus 7519

Sequence ID 3L_DroMel_CAF1
Location 20,206,798 – 20,206,918
Length 120
Max. P 0.710153
window12228

overview

Window 8

Location 20,206,798 – 20,206,918
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.19
Mean single sequence MFE -42.17
Consensus MFE -30.04
Energy contribution -30.85
Covariance contribution 0.81
Combinations/Pair 1.07
Mean z-score -1.82
Structure conservation index 0.71
SVM decision value 0.37
SVM RNA-class probability 0.710153
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20206798 120 + 23771897
UUGUUAUGGAAUUGGUUAAUAGUCUGUACCUGUAUUAGCCAGAAUGAGCGGCCAGGACAGCUCUGUGUGGCUCCAGCAAUGAUCCUUUUGGGCUUCGAAGAGCCCAGAUGUACAAUGCAG
......((((.((((((((((...........)))))))))).....((.((((((.....)))).)).))))))(((.((.....(((((((((....)))))))))....)).))).. ( -37.40)
>DroPse_CAF1 10390 117 + 1
GUCUUGAGGG-UCAGCA--AAGGACAUACCUGUAUUAGCCAGAAGGAGCGUCCCGGGCAGCUCUGAGUUGCUCCCGCUAUGAUUCGCUUGGGCUUCGAGGAGCCCAAAUGCACAAUGCAG
((.(((.(((-(((((.--..((((...(((............)))...)))).(((((((.....)))))))..))..))))))((((((((((....))))))))..)).))).)).. ( -40.80)
>DroEre_CAF1 15818 120 + 1
UUCUUAUGGGUUUGGUUAAUAGUGGGUACCUGUAUUAGCCAGAAGGAGCGGCCAGGACAACUCUGUGUGGCUCCAGCAAUGAUCCUUUUGGGCUUCGAAGAGCCCAGAUGUACAAUGCAG
..........(((((((((((.(((....)))))))))))))).(((((.((((((.....)))).)).))))).(((.((.....(((((((((....)))))))))....)).))).. ( -45.80)
>DroYak_CAF1 29170 120 + 1
UUGUUACGGGUUUAGUUAAUAGUUGGUACCUGUAUUAGCCAGAAGGAGCGGCCAGGACAACUCUGUGUGGCUCCAGCAAUGAUCCUUUUGGGCUUCGAGGAGCCCAGAUGUACAAUGCAG
((((.(((((((..(((....(((((((....))))))).....(((((.((((((.....)))).)).))))))))...))))).(((((((((....))))))))).))))))..... ( -42.50)
>DroAna_CAF1 16391 120 + 1
UUUUUUUUUCAUCUGGAAAUGUGACGUACCUGUAUUAACCAGAAGGAGCGGCCAGGGCAGCUUUGUGUGGCUCCCGCAAUGAUUCGUUUGGGCUUCGAGGAGCCCAGAUGGACAAUGCAG
...........(((((.......(((....))).....))))).(((((.(((((((...))))).)).))))).(((.((.(((((((((((((....))))))))))))))).))).. ( -45.70)
>DroPer_CAF1 10454 117 + 1
GUCUUGAGGG-UCAGCA--AAGGACAUACCUGUAUUAGCCAGAAGGAGCGUCCCGGGCAGCUCUGAGUUGCUCCCGCUAUGAUUCGCUUGGGCUUCGAGGAGCCCAAAUGCACAAUGCAG
((.(((.(((-(((((.--..((((...(((............)))...)))).(((((((.....)))))))..))..))))))((((((((((....))))))))..)).))).)).. ( -40.80)
>consensus
UUCUUAUGGG_UCAGUAAAUAGGACGUACCUGUAUUAGCCAGAAGGAGCGGCCAGGACAGCUCUGUGUGGCUCCAGCAAUGAUCCGUUUGGGCUUCGAGGAGCCCAGAUGUACAAUGCAG
.............................(((((((........(((((.((((((.....)))).)).)))))............(((((((((....))))))))).....))))))) (-30.04 = -30.85 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:19 2006