Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,204,649 – 20,204,753 |
Length | 104 |
Max. P | 0.908361 |
Location | 20,204,649 – 20,204,753 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 76.62 |
Mean single sequence MFE | -36.00 |
Consensus MFE | -26.05 |
Energy contribution | -27.55 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.16 |
Mean z-score | -1.49 |
Structure conservation index | 0.72 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908361 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20204649 104 - 23771897 -----------AAUAAAGCUAA--CUAAACUCGUUGCAGCGCGGAAAUUAAGGAGCUGGGAAGCUCGGCCUCCAUGGUGACUCUGCGCAACGAGAGAUCGUCACCAGCGCGAUCUCU -----------...........--......(((((((...(((((.((((.(((((((((...))))).)))).))))...))))))))))))((((((((.......)))))))). ( -38.40) >DroSec_CAF1 18532 104 - 1 -----------AAUAACGCUAA--CUCAAUUCGUUGCAGCGCUGAAAUUAAGGAGCUGGGAAGCUCGGCCUCCAUGGUGACCCUGCGCAACGAGAGAUCGUCACCAGCGCGAUCUCU -----------...........--......(((((((.(((.....((((.(((((((((...))))).)))).)))).....))))))))))((((((((.......)))))))). ( -36.00) >DroSim_CAF1 13487 104 - 1 -----------AAUAAAGCUAA--CUCAUUUCGUUGCAGCGCUGAAAUCAAGGAGCUGGGAAGCUCGGCCUCCAUGGUGACCCUGCGCAACGAGAGAUCGUCACCAGCGCGAUCUCU -----------...........--......(((((((.(((.....((((.(((((((((...))))).)))).)))).....))))))))))((((((((.......)))))))). ( -38.10) >DroEre_CAF1 13779 115 - 1 GGAAGAGGAGAAAUAGAGCUAA--UUAUGUCCGUUGCAGCGCGGAAAUCAAGGAGCUGGGAAGCUCGGCCUCCAUGGUGACUCUGCGCAAUGAGAGAUCGUCACCAGCGCGAUCUCU (((.((..((........))..--))...)))......(((((((.((((.(((((((((...))))).)))).))))...)))))))....(((((((((.......))))))))) ( -41.20) >DroYak_CAF1 27101 110 - 1 -------UAAAGCUAAAGCUAAGCUAACAUCCGUUAUAGCGCCGAAAUCAAGGAGCUGGGAAGCUCGGCCUCCAUGGUGACUCUGCGCAACGAGAGAGCGUCACCAGUGCGAUGUCU -------...((((.......)))).(((((((((...((((.((.((((.(((((((((...))))).)))).))))...)).)))))))).....(((.(....))))))))).. ( -32.30) >DroPer_CAF1 8881 111 - 1 GACAGACGUAAAAU----CCAA--UGCUCUUUCCUGCAGAGAUCCCAUACCAGAGCUUGGUAGCUCGGCCUCAAUGCUGACGUUGCGGAAUGAGCGCUCCUCGCCAGCGCGAUCGCU ..............----....--.((((.((((.((((........((((((...))))))(.(((((......)))))).)))))))).))))((...((((....))))..)). ( -30.00) >consensus ___________AAUAAAGCUAA__CUAAAUUCGUUGCAGCGCUGAAAUCAAGGAGCUGGGAAGCUCGGCCUCCAUGGUGACUCUGCGCAACGAGAGAUCGUCACCAGCGCGAUCUCU ...............................((((((.(((.....((((.(((((((((...))))).)))).)))).....)))))))))(((((((((.......))))))))) (-26.05 = -27.55 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:18 2006