| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,203,363 – 20,203,475 |
| Length | 112 |
| Max. P | 0.565221 |
| Location | 20,203,363 – 20,203,475 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 87.57 |
| Mean single sequence MFE | -36.02 |
| Consensus MFE | -31.06 |
| Energy contribution | -30.20 |
| Covariance contribution | -0.86 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20203363 112 - 23771897 GAAAUCAUCGGGGGAUCUGCAGGAGUUUCUGUCUCUCGAUGAUAUUCAGUUCGCCGACGAGAGUGGCAGUGACUACGAGGCUGUAAACCUCAAGAAAGUACCCAAAUCGGAG-- ((((((((((((((....(((((....)))))))))))))))).)))..((((((.((....))))).........((((.......))))..))).....((.....))..-- ( -34.10) >DroSec_CAF1 17244 112 - 1 GAAAUCAUCGGGGGAUCUGCAGGAGUUCCUGUCUCUCGAUGAUAUUCAGUUCGCCGACGAGAGUGGCAGCGACUACGAGGCUGUCAACCUCAAGAAAGUACCCAAGUCGGAG-- ((((((((((((((....(((((....)))))))))))))))).)))......((((((((..(((((((.........)))))))..)))..(........)..)))))..-- ( -44.70) >DroSim_CAF1 12200 112 - 1 GAAAUCAUCGGGGGAUCUGCAGGAGUUCCUGUCCCUCGAUGAUAUUCAGUUUGCUGAUGAGAGUGGCAGUGACUACGAGGCUGUCAACCUCAAGAAAGUACCCAAGUCGGAG-- ((((((((((((((....(((((....)))))))))))))))).))).(..((((..((((..(((((((.........)))))))..))))....))))..).........-- ( -42.50) >DroEre_CAF1 12490 112 - 1 GAAGUUAUCGGGGGAUCUGCAGGAGUUCUUGUCUCUCGAUGAUAUUCAGUUUGCCGAUGAGAGUGGCAGCGAUUACGAGGCUGUAAACCUCAAGAAAGUACCCAAAUCGGAA-- ((((((((((((((....(((((....)))))))))))))))).)))......((((((((.((.(((((.........)))))..)))))..(........)..)))))..-- ( -32.50) >DroYak_CAF1 25809 112 - 1 GAAAUUAUCGGGGGAUCUGCAGGAGUUCUUGUCUCUCGAUGAUAUUCAGUUUGCCGAUGAGAGUGGCAGCGAUUACGAGGCUGUAAACCUCAAGAAAGUGCCCAAAUCAGAA-- ((((((((((((((....(((((....)))))))))))))))).))).(((.(((.((....))))))))((((..((((.......))))..(........).))))....-- ( -30.80) >DroAna_CAF1 13379 114 - 1 AAAGUCCUCGGGGGAUCUGCAGGAAUUCCUGGCUCUAGACGACAUCCAGUUCGCCGAUGAAAGUGGCAGCGAUUACGAGGCAGUAAACCUCAAAAAAGGCAUCGAGAUAGAGUC ...((((.....))))...((((....))))((((((..(((...((.(((.(((.((....))))))))......((((.......))))......))..)))...)))))). ( -31.50) >consensus GAAAUCAUCGGGGGAUCUGCAGGAGUUCCUGUCUCUCGAUGAUAUUCAGUUCGCCGAUGAGAGUGGCAGCGACUACGAGGCUGUAAACCUCAAGAAAGUACCCAAAUCGGAG__ ((((((((((((((....(((((....)))))))))))))))).)))((((.(((.((....)))))...))))..((((.......))))....................... (-31.06 = -30.20 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:17 2006