Locus 7514

Sequence ID 3L_DroMel_CAF1
Location 20,196,356 – 20,196,459
Length 103
Max. P 0.807660
window12220

overview

Window 0

Location 20,196,356 – 20,196,459
Length 103
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 73.38
Mean single sequence MFE -28.48
Consensus MFE -20.10
Energy contribution -20.18
Covariance contribution 0.08
Combinations/Pair 1.33
Mean z-score -1.10
Structure conservation index 0.71
SVM decision value 0.64
SVM RNA-class probability 0.807660
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20196356 103 - 23771897
AAAC-UAU---CUUAUUCCGCAAAAUACCUGCUGCCACUCGGUUUUGUCCAGUGGUUCGCCAUCCGUAAGUGGCGGUCGCAAAAUGGACACGUACUGUGAGUUUUAA
((((-(..---........(((.......))).....(.((((..((((((.(((..((((((......))))))..).))...))))))...)))).))))))... ( -27.60)
>DroPse_CAF1 1419 94 - 1
AAAG-CCU---UCUUUGUGG--AUGUACCUGUUGCCAUUCGGUUUUAUCCAGAGGCUCGCCGUCUGUGAGCGGUGGUCGCAGAAUGGAUACGUACUGGAA-------
..((-(((---(.....(((--(((.(((...........)))..))))))))))))((((((......)))))).((.(((.(((....))).))))).------- ( -28.00)
>DroGri_CAF1 3877 100 - 1
AUUGCUGUAUUCUUAUAU---AUCAUACCUGUUGCCACUCUCCCUUGUCCAGAGCCUCGCCAUCAGUAAGAGGUGGCCGCAGUAUGGAUACGUACUACAA----UAA
((((..((((.....(((---.((((((.(((.((((((((..((.((...(.....)...)).))..))).))))).)))))))))))).))))..)))----).. ( -23.50)
>DroEre_CAF1 5120 101 - 1
AAAC-AAU---CUUAUCCAGGA--AUACCUGCUGCCACUCGGUUUUGUCCAGUGGUUCGCCAUCCGUGAGCGGCGGUCGCAAAAUGGACACGUACUGGGAGUUUUAA
((((-...---......((((.--...))))......((((((..((((((.(((..((((...(....).))))..).))...))))))...)))))).))))... ( -30.80)
>DroYak_CAF1 18570 101 - 1
AAAC-UAU---CUUAUCCAGCA--AUACCUGCUGCCACUCGGUUUUGUCCAGUGGUUCGCCAUCCGUAAGUGGUGGUCGCAAGAUGGACACGUACUGAGAAUUUUAA
....-...---......(((((--.....)))))...((((((..((((((...((..(((((((....).)))))).))....))))))...))))))........ ( -33.00)
>DroPer_CAF1 1485 94 - 1
AAAG-CCU---UCUUUGUGG--AUGUACCUGUUGCCAUUCGGUUUUAUCCAGAGGCUCGCCGUCUGUGAGCGGUGGUCGCAGAAUGGAUACGUACUGGAA-------
..((-(((---(.....(((--(((.(((...........)))..))))))))))))((((((......)))))).((.(((.(((....))).))))).------- ( -28.00)
>consensus
AAAC_UAU___CUUAUCCAG_AA_AUACCUGCUGCCACUCGGUUUUGUCCAGAGGCUCGCCAUCCGUAAGCGGUGGUCGCAAAAUGGACACGUACUGGAA____UAA
.....................................((((((..((((((...(((((((((......)))))))..))....))))))...))))))........ (-20.10 = -20.18 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:11 2006