Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,194,251 – 20,194,341 |
Length | 90 |
Max. P | 0.998637 |
Location | 20,194,251 – 20,194,341 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 96.74 |
Mean single sequence MFE | -23.83 |
Consensus MFE | -22.82 |
Energy contribution | -22.98 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.89 |
Structure conservation index | 0.96 |
SVM decision value | 3.17 |
SVM RNA-class probability | 0.998637 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20194251 90 + 23771897 CCUUGCCA------CAGUCUUUGACGUUUUCAGCAUUGUGUUAAUAGCAGACGAAUAAAUUUGCAUCAAAAUGGAUGAGAACGGCAAGUACUUUGU .((((((.------..(((...)))(((((((.((((.((......(((((........)))))..)).))))..)))))))))))))........ ( -23.60) >DroSec_CAF1 8351 90 + 1 CCUUGCCA------CAGUCUUUGACGUUUUCAGCAUUGUGUUAAUAGCAGACGAAUAAAUUUGCAUCAAAAUGGAUGAGAACGGCAAGUACUUUGU .((((((.------..(((...)))(((((((.((((.((......(((((........)))))..)).))))..)))))))))))))........ ( -23.60) >DroSim_CAF1 3060 90 + 1 CCUUGCCA------CAGUCUUUGACGUUUUCAGCAUUGUGUUAAUAGCAGACGAAUAAAUUUGCAUCAAAAUGGAUGAGAACGGCAAGUACUUUGU .((((((.------..(((...)))(((((((.((((.((......(((((........)))))..)).))))..)))))))))))))........ ( -23.60) >DroEre_CAF1 2824 96 + 1 CCUUGCCACAGCCACAGUCUUUGACGUUUUCAGCAUUGUGGUAAUAGCAGACGAAUAAAUUUGCAUCAAAAUGGAUGAGAACGGCAAGUACUUUGU .((((((.........(((...)))(((((((.((((.((((....(((((........))))))))).))))..)))))))))))))........ ( -26.00) >DroYak_CAF1 16579 90 + 1 CCUUGCCA------CAGUCUUUGACGUUUUCAGCAUUGUGUUAAUAGCAGACGAAUAAAUUUGCAUCAAAAUGGAUGAGAACGGCAAGUACUUUGU .((((((.------..(((...)))(((((((.((((.((......(((((........)))))..)).))))..)))))))))))))........ ( -23.60) >DroAna_CAF1 6257 90 + 1 CCUCGCCA------CAGUCUUUGACGUUUUCAGCAUUGUGUGAAUAGCAGACGAAUAAAUUUGCAUCAAAAUGGAUGAGAACGGCAAGUACUUUGU ......((------.(((.((((.((((((((.((((...(((...(((((........))))).))).))))..)))))))).)))).))).)). ( -22.60) >consensus CCUUGCCA______CAGUCUUUGACGUUUUCAGCAUUGUGUUAAUAGCAGACGAAUAAAUUUGCAUCAAAAUGGAUGAGAACGGCAAGUACUUUGU .((((((.........(((...)))(((((((.((((.((......(((((........)))))..)).))))..)))))))))))))........ (-22.82 = -22.98 + 0.17)
Location | 20,194,251 – 20,194,341 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 96.74 |
Mean single sequence MFE | -18.68 |
Consensus MFE | -17.99 |
Energy contribution | -18.18 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.03 |
Mean z-score | -0.88 |
Structure conservation index | 0.96 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.758127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20194251 90 - 23771897 ACAAAGUACUUGCCGUUCUCAUCCAUUUUGAUGCAAAUUUAUUCGUCUGCUAUUAACACAAUGCUGAAAACGUCAAAGACUG------UGGCAAGG ........(((((((((.(((..((((((((((((.((......)).))).)))))...)))).))).)))(((...)))..------.)))))). ( -18.70) >DroSec_CAF1 8351 90 - 1 ACAAAGUACUUGCCGUUCUCAUCCAUUUUGAUGCAAAUUUAUUCGUCUGCUAUUAACACAAUGCUGAAAACGUCAAAGACUG------UGGCAAGG ........(((((((((.(((..((((((((((((.((......)).))).)))))...)))).))).)))(((...)))..------.)))))). ( -18.70) >DroSim_CAF1 3060 90 - 1 ACAAAGUACUUGCCGUUCUCAUCCAUUUUGAUGCAAAUUUAUUCGUCUGCUAUUAACACAAUGCUGAAAACGUCAAAGACUG------UGGCAAGG ........(((((((((.(((..((((((((((((.((......)).))).)))))...)))).))).)))(((...)))..------.)))))). ( -18.70) >DroEre_CAF1 2824 96 - 1 ACAAAGUACUUGCCGUUCUCAUCCAUUUUGAUGCAAAUUUAUUCGUCUGCUAUUACCACAAUGCUGAAAACGUCAAAGACUGUGGCUGUGGCAAGG ........(((((((((.(((..((((.(((((((.((......)).))).))))....)))).))).)))((((.......))))...)))))). ( -18.90) >DroYak_CAF1 16579 90 - 1 ACAAAGUACUUGCCGUUCUCAUCCAUUUUGAUGCAAAUUUAUUCGUCUGCUAUUAACACAAUGCUGAAAACGUCAAAGACUG------UGGCAAGG ........(((((((((.(((..((((((((((((.((......)).))).)))))...)))).))).)))(((...)))..------.)))))). ( -18.70) >DroAna_CAF1 6257 90 - 1 ACAAAGUACUUGCCGUUCUCAUCCAUUUUGAUGCAAAUUUAUUCGUCUGCUAUUCACACAAUGCUGAAAACGUCAAAGACUG------UGGCGAGG ........(((((((((.(((..((((.(((.(((.((......)).)))...)))...)))).))).)))(((...)))..------.)))))). ( -18.40) >consensus ACAAAGUACUUGCCGUUCUCAUCCAUUUUGAUGCAAAUUUAUUCGUCUGCUAUUAACACAAUGCUGAAAACGUCAAAGACUG______UGGCAAGG ........(((((((((.(((..((((((((((((.((......)).))).)))))...)))).))).)))(((...))).........)))))). (-17.99 = -18.18 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:10 2006