| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,190,003 – 20,190,102 |
| Length | 99 |
| Max. P | 0.566644 |
| Location | 20,190,003 – 20,190,102 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 86.14 |
| Mean single sequence MFE | -36.42 |
| Consensus MFE | -26.23 |
| Energy contribution | -27.35 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20190003 99 - 23771897 CGCGGGCGUGGAUGUGGAUGUGAGUGUGGGUGUGGGUGUGGGGCCAAGAGGUCCGCCUUAUGUCACUCGCCUGACAAGGUAAUAUAAUUUGCCCGCCCG ..((((((..........(((.((.(((((((.((((...(((((....))))))))).....))))))))).))).(((((......))))))))))) ( -41.80) >DroSec_CAF1 22378 93 - 1 CGCGGGCGCGGACGUGGAUGU------GGAUGUGGGUGUGGGGCCAAGAGGUCCGCCUUAUGUCACUCGCCUGACAAGGUAAUAUAAUUUGCACGCCCG ((((..(((....)))..)))------).....((((((((((((....)))))((((..(((((......)))))))))...........))))))). ( -36.20) >DroSim_CAF1 24268 87 - 1 CGCGGGC------UUGUAUGU------GGAUGUGGGUGUGGGGCCAAGAGGUCCGCCUUAUGUCACUCGCCUGACAAGGUAAUAUAAUUUGCACGCCCG ..(((((------.((((...------.((((((((.(((((.((....)))))))))))))))....((((....)))).........)))).))))) ( -33.30) >DroEre_CAF1 22190 87 - 1 CGUGGUU------GCGGGUGU------GGGUGCGGGUGUGGUGCCAAGAGGUCCGCCUUAUGUCACUCGCCUGACAAGGUAAUAUAAUUUGCCCGCCCG .......------.((((((.------..((.((((((.((((.((.((((....)))).)).))))))))))))..(((((......))))))))))) ( -34.40) >consensus CGCGGGC______GUGGAUGU______GGAUGUGGGUGUGGGGCCAAGAGGUCCGCCUUAUGUCACUCGCCUGACAAGGUAAUAUAAUUUGCACGCCCG ((((........)))).................((((((((((((....)))))((((..(((((......)))))))))...........))))))). (-26.23 = -27.35 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:08 2006