Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,184,133 – 20,184,347 |
Length | 214 |
Max. P | 0.956463 |
Location | 20,184,133 – 20,184,228 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -24.86 |
Consensus MFE | -20.42 |
Energy contribution | -20.66 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.07 |
Mean z-score | -1.82 |
Structure conservation index | 0.82 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.914024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20184133 95 + 23771897 CCGAAAAACUCGUAAAGAGCAGCUCCUCGGAGUUCUUGUUUCUGGUGUUUUCUUAGCACGAAAUGCCAAUUUAGAGUCAUUUAAAUUGGGUAGAA .(((.....)))....(((.(((((....))))))))..((((((((((.....)))))......((((((((((....)))))))))).))))) ( -23.70) >DroSec_CAF1 16544 95 + 1 ACGAAAAACUCGUAAAGAGCAGCUCCUUGGAGCUCUUGUUUCUGGUGUUUUCUUAGCACGAAAUGCCAAUUUCGAGUCAUUUAAAUUGGGUAGAA ((((.....))))...(((.(((((....))))))))..((((((((((.....)))))......(((((((.((....)).))))))).))))) ( -24.00) >DroSim_CAF1 17612 95 + 1 ACGAAAAACUCGUAAAGAGCAGCUCCUUGGAGCUCUUGUUUCUGGUGUUUUCUUAGCACGAAAUGCCAAUUUCGAGUCAUUUAAAUUGGGUAGAA ((((.....))))...(((.(((((....))))))))..((((((((((.....)))))......(((((((.((....)).))))))).))))) ( -24.00) >DroEre_CAF1 17115 94 + 1 CCAAA-AAUUCGUAAGGAACAGCUCCUUGGAGUUCUUGUUCCUGGUGUUUUCUCAGCACGAAAUGCCAAUUUAGAGUCAUUUAAAUUGGGUAGAA .....-..(((((.(((((((((((....))))...)))))))(.((......)).))))))...((((((((((....))))))))))...... ( -28.30) >DroYak_CAF1 16409 95 + 1 CCAAAAAACUCGUAAAGAGCAGCUCCUUGGAGUUCUUGUUUCUGGUGUUUUCUCAUCACGAAAUGCCAAUUUAGAGUCAUUUAAAUUGGGUAGAA ................(((.(((((....))))))))((((((((((......))))).))))).((((((((((....))))))))))...... ( -24.30) >consensus CCGAAAAACUCGUAAAGAGCAGCUCCUUGGAGUUCUUGUUUCUGGUGUUUUCUUAGCACGAAAUGCCAAUUUAGAGUCAUUUAAAUUGGGUAGAA ........(((.....))).(((((....))))).....((((((((((.....)))))......((((((((((....)))))))))).))))) (-20.42 = -20.66 + 0.24)
Location | 20,184,228 – 20,184,347 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 91.83 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -28.16 |
Energy contribution | -27.56 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.16 |
Mean z-score | -1.70 |
Structure conservation index | 0.87 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956463 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20184228 119 + 23771897 AGUUGCGGCAAGAAAAGUCUGCCCACAGUCCACAAUGUUGGCUCGAAUUAAGUCGGGUGUUCGAAAGUUUUGUUGCCAGUCGACGGAAAUCGGACUAAAACCGAAAAGCAAUUAACUUA (((((((((((.((((....(((.(((........))).)))((((((..........))))))...)))).)))))............((((.......))))...))))))...... ( -31.30) >DroSec_CAF1 16639 119 + 1 AGUUGCGGCAAGGAAAGUCUGCCCACAGUCCACAAUGUUGGCUUGAAUUAAGUCGAGUGUGCGAAAGUUUCGUUGCCAGUCGACGGAAAUCGGACUAAAACCAAAAAGCAAUUAACUUA ((((((.....((..((((((((.(((........))).)))..((.((..(((((.((.((((........)))))).)))))..)).)))))))....)).....))))))...... ( -33.60) >DroSim_CAF1 17707 119 + 1 AGUUGCGGCAAGGAAAGUCUGCCCACAGUCCACAAUGUUGGCUCGAAUUAAGUCGAGUGUGCGAAAGUUUCGUUGCCAGUCGACGGAAAUCGGACUAAAACCAAAAAGCAAUUAACUUA ((((((.....((..((((.(((.(((........))).))).(((.((..(((((.((.((((........)))))).)))))..)).)))))))....)).....))))))...... ( -34.30) >DroEre_CAF1 17209 116 + 1 AGUUGCGGUAAG---AUUUUCCCCACAGUCAACAAUGUUGGCUCGAAUUAAGUCGAGUGUACGAAAGUUUCGUUGCCAGUCGACGGAAAUCGGACUAAAACCAAAAGGCAAUUAACUUA ((((((.....(---((((((.....(((((((...)))))))........(((((.((.((((.....))))...)).))))))))))))((.......)).....))))))...... ( -31.00) >DroYak_CAF1 16504 113 + 1 AGUUGCGGUAGG---AUUCUCCCCAAAGUCCACAAU---GGCUCGAAUUAAGUCGAGUGUGCGAAAGUUUCGUUGCCAGUCGACGGAAAUCGGACUAAAACCAAAAAGCAAUUAAUUUA ((((((.((.((---(((........)))))))..(---((..(((.((..(((((.((.((((........)))))).)))))..)).)))..)))..........))))))...... ( -31.80) >consensus AGUUGCGGCAAG_AAAGUCUGCCCACAGUCCACAAUGUUGGCUCGAAUUAAGUCGAGUGUGCGAAAGUUUCGUUGCCAGUCGACGGAAAUCGGACUAAAACCAAAAAGCAAUUAACUUA ((((((((..((......))..))..(((((.........((((((......))))))....((...((((((((.....)))))))).)))))))...........))))))...... (-28.16 = -27.56 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:06 2006