Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,241,156 – 2,241,248 |
Length | 92 |
Max. P | 0.541825 |
Location | 2,241,156 – 2,241,248 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 86.18 |
Mean single sequence MFE | -22.00 |
Consensus MFE | -15.16 |
Energy contribution | -16.40 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.72 |
Structure conservation index | 0.69 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541825 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2241156 92 + 23771897 GCCGCCAGUGUGGC-CCAUUGAGCACGACUGAAACACGCUAACGCCUUUAGCUCGGCAGCACUGGCAGCUCCAACAAAAAGCUUCAAUUUAAA ((.((((((((.((-(....((((..(.......)..((....)).....))))))).)))))))).))........................ ( -28.60) >DroSec_CAF1 2040 93 + 1 UUCGACAGUGUGACCCCAUUGAACACGAUUGAAAACCCCUAACGCCUUCUUCUCGGCAGCACUGGCAGCUUCAACAAAAAGCUUCAAUUUAAA .....((((((..((.....(((..((.(((........)))))..))).....))..))))))(.(((((.......))))).)........ ( -16.20) >DroSim_CAF1 4291 93 + 1 GCCGGCAGUGUGACCCCAUUGAAGACGAUUGAAAUACCCUAACGCCUUCUUCUCGGCAGCACUGGCAGCUUCAACAAAAAGCUUCAAUUUAAA ...(.((((((..((.....((((.((.(((........))))).)))).....))..)))))).)(((((.......))))).......... ( -21.10) >DroEre_CAF1 4786 91 + 1 GCCGCCAGUGUGAC-CCAUCGCCAACGACUGAAACACCCUAACGCCUUUUGCUUAGCAGAACUGGCAGCUUCAACAAAAAGCA-CAAUUUAAA ...(((((((((..-.(((((....))).))...)))..........(((((...))))))))))).((((.......)))).-......... ( -18.60) >DroYak_CAF1 4944 91 + 1 GCCGCCAGUGUGAC-CCACUGGCAACGACUGAAACACCCUAACGCCUUUGGCUUAGCAGCACUGGCAGCUUCAACAAAAAGCA-CAAUUUAAA ((((((((((....-.)))))))...(.(((.......((((.(((...)))))))))))...))).((((.......)))).-......... ( -25.51) >consensus GCCGCCAGUGUGAC_CCAUUGAAAACGACUGAAACACCCUAACGCCUUUUGCUCGGCAGCACUGGCAGCUUCAACAAAAAGCUUCAAUUUAAA ...((((((((.....(((((....))).))............(((........))).)))))))).((((.......))))........... (-15.16 = -16.40 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:16 2006