Locus 7508

Sequence ID 3L_DroMel_CAF1
Location 20,174,759 – 20,174,866
Length 107
Max. P 0.951814
window12210

overview

Window 0

Location 20,174,759 – 20,174,866
Length 107
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 93.54
Mean single sequence MFE -20.64
Consensus MFE -18.12
Energy contribution -17.96
Covariance contribution -0.16
Combinations/Pair 1.07
Mean z-score -1.62
Structure conservation index 0.88
SVM decision value 1.42
SVM RNA-class probability 0.951814
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20174759 107 - 23771897
UUUUGAAGGGGGAACCAAGCGCAUCGUGGCCAAAAGGGAUACAAAA---AAAAUGAAGAUACGAAAAAAAUAGGGGGAUCCCUUCAGUGCAGAAAAGUUGGGGAACAAAC
..(((((((((...((.......(((((.((....))....((...---....))....))))).........))...))))))))).........(((.(....).))) ( -18.99)
>DroSec_CAF1 7053 107 - 1
UUUUGAAGGGGGAACCAAGCGCAUCGUGGCCAAAAGGGAUACAAAA--AAAAAUGAAGAUACGAAAAAAAUAGGGGGAGCCCUUGAGUGCAGAAAAGUUGG-GUACAAAC
.((((...((....))..((((.(((((.((.....)).)))....--.......................((((....)))).))))))...........-...)))). ( -20.40)
>DroSim_CAF1 8024 109 - 1
UUUUGAAGGGGGAACCAAGCGCAUCGUGGCCAAAAGGGAUACAAAAAAAAAAAUGAAGAUACGAAAAAAAUAGGGGGAGCCCUUGAGUGCAGAAAAGUUGG-GUACAAAC
.((((...((....))..((((.(((((.((.....)).))).............................((((....)))).))))))...........-...)))). ( -20.40)
>DroEre_CAF1 7068 104 - 1
UUUUGAAGGGGGAACCAAGCGCAUCGUGGCCAAAAGGGAUACAAAA---AAAAUGAAGAUAUGAAAAAAA-AGGGGGAGCCCUUGAGUGUAGAAAAGUUUGGGAACCA--
.........((...((((((...(((((.((.....)).)))....---....................(-((((....))))).......))...))))))...)).-- ( -23.30)
>DroYak_CAF1 6970 107 - 1
UUUUGAAGGGGGAACCAAGCGCAUCGUGGCCAAAAGGGAUACAAAA---AAAAUGAAGAUAUGAAAAAAAUAGGGGGAGCCCUUGAGUGCAGAAAAGUUAGGGAACAAGC
.((((...((....))..((((.(((((.((.....)).)))....---......................((((....)))).))))))...............)))). ( -20.10)
>consensus
UUUUGAAGGGGGAACCAAGCGCAUCGUGGCCAAAAGGGAUACAAAA___AAAAUGAAGAUACGAAAAAAAUAGGGGGAGCCCUUGAGUGCAGAAAAGUUGGGGAACAAAC
........((....))..((((...(((.((.....)).))).............................((((....))))...)))).................... (-18.12 = -17.96 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:02 2006