| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,169,443 – 20,169,548 |
| Length | 105 |
| Max. P | 0.577637 |
| Location | 20,169,443 – 20,169,548 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 82.56 |
| Mean single sequence MFE | -34.55 |
| Consensus MFE | -25.10 |
| Energy contribution | -25.47 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.577637 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20169443 105 - 23771897 G----UUGCUA----------ACCCACUUUUGUGCUCUCCACAGACCCCUUGAGUGUGCCGCCGCGACGGGAGCAAUGCUCCCGCAAGGCCAAGCAGAGCAGCAUGCAUGCCAUGCUCA .----.((((.----------...(((((..(.(.(((....))).).)..)))))....(((..(.(((((((...))))))))..)))..))))((((((((....)))..))))). ( -36.50) >DroVir_CAF1 7547 108 - 1 GAUGCUUGCUA----------AC-UACUUUUGUGCUCUUCACAGACCCUUUAAACUUGCCGCCGCGGCGGGAGCAAUGCUCCCGCAAGGCCAAGGAGAGCAGCAUGCACGCGCUUCUCU ..(((.((((.----------..-.((....))(((((((.(((...........)))..(((...((((((((...))))))))..)))...))))))))))).)))........... ( -38.80) >DroGri_CAF1 8139 104 - 1 ----CUUGCUA----------AC-CACUUUUGUGCUCUUCACAGACCCAUUAAACUUGCCGCCACGUCGGGAGCAAUGCUCCCGCAAGGCCAAGGAGAGCAGCAUGCACGCGUUGCUCU ----.......----------..-....((((((.....)))))).........((((..(((..(.(((((((...))))))))..))))))).((((((((........)))))))) ( -34.40) >DroWil_CAF1 20552 105 - 1 G----UCUCUA----------ACAAGAUUUUGUGUGCUCCACAGACCCACUCAAUAUACCGCCACGUCGGGAGCAAUGCUCACGCAAGGCCAAGCAGAGCAGUAUGCACGCUUUGCUCU (----(((...----------.............((((((...(((...................))).)))))).(((....)))))))..((((((((.((....)))))))))).. ( -26.11) >DroMoj_CAF1 8394 104 - 1 G----UUGCUA----------AC-UACUUUUGUGCUCUCCACAGACCCUUUAAACUUGCCGCCACGUCGGGAGCAAUGCUCCCGCAAGGCCAAGGAGAGCAGCAUGCACGCACUUCUCU (----(((((.----------..-.((....))(((((((.(((...........)))..(((..(.(((((((...))))))))..)))...))))))))))).))............ ( -32.70) >DroAna_CAF1 2389 115 - 1 G----UUGCUAAAGCUAACCAACCCAAUUUUGUGCUCUCCACAGACCCGUUGAGUGUGCCGCCGCGUCGGGAGCAAUGCUCCCGCAAGGCCAAGCAGAGCAGCAUGCACGCCAUGCUCC (----(((((...(((...............(..(.(((.((......)).))).)..).(((..(.(((((((...))))))))..)))..)))..))))))..(((.....)))... ( -38.80) >consensus G____UUGCUA__________AC_CACUUUUGUGCUCUCCACAGACCCAUUAAACUUGCCGCCACGUCGGGAGCAAUGCUCCCGCAAGGCCAAGCAGAGCAGCAUGCACGCCAUGCUCU ............................((((((.....))))))...............(((..(.(((((((...))))))))..)))......(((((((......))..))))). (-25.10 = -25.47 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:59 2006