Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,167,969 – 20,168,062 |
Length | 93 |
Max. P | 0.584282 |
Location | 20,167,969 – 20,168,062 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 78.96 |
Mean single sequence MFE | -20.93 |
Consensus MFE | -14.05 |
Energy contribution | -14.25 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.20 |
Mean z-score | -1.24 |
Structure conservation index | 0.67 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20167969 93 + 23771897 UCGUGUGCAAUCUUGUGGAAGAGAUCUGCACGAGCGGCACAGAUGCGGCAUAGAACAAUAUCCUGCAGAAACAAAGUAACAUUAAAGUCAAUA ((.(((((...((((((..((....)).))))))..)))))))(((((.(((......))).))))).......................... ( -22.10) >DroVir_CAF1 6104 80 + 1 UCGUGAGCAAUCUUGUGGAAGAGAUCCGCACGCGCAGCACAAAUGCGACACAAUACAAUGUCCUGAAA--GCAAA-U--AGA-AUG------- ..(((.((.(((((......)))))..)).)))((.(((....)))((((........))))......--))...-.--...-...------- ( -15.60) >DroGri_CAF1 6632 86 + 1 UCAUGUGCAAUUUUGUGGAAGAGAUCCGCACGAGCGGCACAAAUGCGACACAACACAAUGUCCUAAAA--GCAAACCAAAAU-UUA----AUA ...(((((..((.((((((.....)))))).))...)))))..(((((((........))))......--))).........-...----... ( -18.50) >DroSec_CAF1 263 93 + 1 UCGUGUGCAAUCUUGUGGAAGAGGUCUGCACGAGCGGCACAGAUGCGACAUAGAACAAUAUCCUGCAGAAACAAAAUAACAUUAAAGUCAAUA ((.(((((...((((((..((....)).))))))..)))))))((((..(((......)))..)))).......................... ( -18.50) >DroEre_CAF1 271 92 + 1 UCGUGUGCAAUCUUGUGGAAGAGAUCUGCACGAGCGGCACAGAUGCGGCAUAAGACAAUGUCCUGCAGAAACGAAAUAGCGUUAAAGUU-AUA ((((((((...((((((..((....)).))))))..))))...((((((((......))).)).)))...)))).(((((......)))-)). ( -26.20) >DroYak_CAF1 260 92 + 1 UCGUGUGCAAUCUUGUGAAAGAGAUCUGCACGAGCGGCACAGAUGCGGCAUAAGACAAUGUCCUGCAGGAGCAAAAUAGCGUUCAUGUU-AUA .(((((((((((((......))))).)))))..)))(((..((((((((((......))))).(((....))).....)))))..))).-... ( -24.70) >consensus UCGUGUGCAAUCUUGUGGAAGAGAUCUGCACGAGCGGCACAGAUGCGACAUAAAACAAUGUCCUGCAGAAACAAAAUAACAUUAAAGU__AUA ...(((((..((.((((((.....)))))).))...)))))..((((..(((......)))..)))).......................... (-14.05 = -14.25 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:58 2006