Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,166,135 – 20,166,231 |
Length | 96 |
Max. P | 0.687575 |
Location | 20,166,135 – 20,166,231 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 81.36 |
Mean single sequence MFE | -34.03 |
Consensus MFE | -18.71 |
Energy contribution | -19.72 |
Covariance contribution | 1.01 |
Combinations/Pair | 1.34 |
Mean z-score | -2.36 |
Structure conservation index | 0.55 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687575 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20166135 96 + 23771897 AAAGGCGCAGCUGCGCAAGGCGAGAAUCAUCCUGAAAGAAUCCGAUGGCGACC------AAGUGGCCGCGGUCCAGGAAGUCCUGCAAUUGUGUGAAAACCA ....((((....))))...(((.((....(((((...((..(((.((((.((.------..)).))))))))))))))..)).)))...((.((....)))) ( -28.20) >DroSec_CAF1 3247 96 + 1 AAAGGCGCAGUUGCGCAGGGCGAGAAACAUUCUGAAUGAAUCCGAUGGCGACC------AAGUGGCCGCGGUCCAGGAAGUCCUGCAACUGUGUGAAAAGCA ....((((((((((..(((((........(((.....)))((((((.(((.((------....)).))).)))..))).)))))))))))))))........ ( -36.50) >DroSim_CAF1 5595 96 + 1 AAAGGCGCAGUUGCGCAGGGCGAGAAACAUCCUUAAUGAAUCCGAUGGCGACC------AAGUGGCCGCGGUCCAGGAAGUCCUGCAACUGUGUGAAAAGCA ....((((((((((..((((((((.......)))......((((((.(((.((------....)).))).)))..))).)))))))))))))))........ ( -35.90) >DroEre_CAF1 3257 96 + 1 AAAGGCACAGUUGCGCAGGGCGAGAAACAUCCUGAGCGAAUCCGAUGGAGACC------AAGUGGCUGCCGUCCAGGAAGUCCUGCAACUGUGCGAACAGCA ....((((((((((..((((((.....).(((((...(....)(((((((.((------....)))).)))))))))).)))))))))))))))........ ( -37.70) >DroYak_CAF1 3175 96 + 1 AAAGGUACAGUUGCGAAGGGCGAGAAACAUCCUGAGUGAAUCCGAUGGAGACC------AAGUGGCUGCGGUCCAGGAAGUCCUGCAAUUGUGCGAACAGCA ....((((((((((..((((((.....).((((((.((...(((..(....).------...)))...)).).))))).)))))))))))))))........ ( -30.70) >DroAna_CAF1 3429 102 + 1 AAAGUUUCAGCUGAGGAAGACCAAAAAGAUGCUGGGAGCAUCGGAUGGAGAGCCAUCUGAAGUGGCAGCCAUGCGCGAGGUACUGGAUCUCUGUGAGAAACA ...(((((.((.((((.(((((.....(((((.....)))))(.((((...(((((.....)))))..)))).)....))).))...)))).))..))))). ( -35.20) >consensus AAAGGCGCAGUUGCGCAGGGCGAGAAACAUCCUGAAUGAAUCCGAUGGAGACC______AAGUGGCCGCGGUCCAGGAAGUCCUGCAACUGUGUGAAAAGCA ....((((((((((..((((((.....).(((((.......(((.(((..((.........))..))))))..))))).)))))))))))))))........ (-18.71 = -19.72 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:54 2006