| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,159,728 – 20,159,831 |
| Length | 103 |
| Max. P | 0.717194 |
| Location | 20,159,728 – 20,159,831 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.17 |
| Mean single sequence MFE | -22.52 |
| Consensus MFE | -8.48 |
| Energy contribution | -8.04 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.717194 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20159728 103 + 23771897 CCGUCUUGUUAACUGUUUCUAUUUGUUUAUCUACAAAACGUAGUUGAGU----UAAUUUGCAAUAAAACGAGAGCUUAUGCUC--A----GGAAAAUAAGAACUUUUUUAUAU------- ...(((((((...(((....(((..((((.((((.....)))).)))).----.)))..))).........((((....))))--.----....)))))))............------- ( -17.40) >DroSec_CAF1 19829 103 + 1 ACGUUUUGUUAACUGUUUCUAUUUGUUUAUCUACCAAACGUAGAUGAGU----UAAUUUGCAAUAACACGAGAGCUUAUGCUC--A----AGAAAAUAAGAACUUUUUUAUAU------- ..(((((((((..(((....(((..(((((((((.....))))))))).----.)))..))).))))....((((....))))--.----........)))))..........------- ( -20.60) >DroSim_CAF1 27918 107 + 1 ACGUUUUGUUAACUGUUUCUAUUUGCUUAACUACAAAACGUAGAUGAGUAUUGCAAAUUGCAAUAACACGAGAGCUUAUGCUC--A----AGAAAAUAAGAACUUUUUUAUAU------- .......(((.....(((((....(((((.((((.....)))).)))))(((((.....))))).......((((....))))--.----))))).....)))..........------- ( -22.40) >DroEre_CAF1 21758 106 + 1 ACAUUUUGUUAACUGUUUC----UGGUUAUCUAGAAAACGUAUUUAAAU----AGAUUUGCCAUAAAGUGGGAGCUAAUGCUUCUA----AGAUAAUAAGAACUAGAUUGCACUAUAA-- ...((((((((.((.(((.----((((.(((((.(((.....)))...)----))))..)))).))).(((((((....)))))))----)).)))))))).................-- ( -20.50) >DroYak_CAF1 17284 111 + 1 ACCUUUUGUUAACUGU-UC----UGGUUAUGUAGAAGGCGUAUUUAAAU----AAAUAUGCCUUAAAACGAGAGCUUAUGCUCUUAUUAUGGAUAAUAAGAACUAGAUUGCAUUGUUAAG ......(((...((((-((----(.(((((.((.(((((((((((....----))))))))))).....((((((....))))))....)).))))).))))).))...)))........ ( -31.70) >consensus ACGUUUUGUUAACUGUUUCUAUUUGGUUAUCUACAAAACGUAGUUGAGU____AAAUUUGCAAUAAAACGAGAGCUUAUGCUC__A____AGAAAAUAAGAACUUUUUUAUAU_______ ...(((((((..((............(((.((((.....)))).)))........................((((....)))).......))..)))))))................... ( -8.48 = -8.04 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:53 2006