| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 289,019 – 289,139 |
| Length | 120 |
| Max. P | 0.804008 |
| Location | 289,019 – 289,139 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.67 |
| Mean single sequence MFE | -22.82 |
| Consensus MFE | -17.88 |
| Energy contribution | -18.52 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.804008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 289019 120 - 23771897 GGAGGGCACUAAAACAAAUAGUUAGGCACUGAAAGUGCACAAUUUCAAGCCUAUAAACAUGAGCAGCACUAUUCAAAGUACAUACUUGUAUGUACAUUUAAGUUUACUUUCACGCAAAAA (((((.................(((((..(((((........))))).)))))(((((.((((........))))..(((((((....)))))))......))))))))))......... ( -24.70) >DroSec_CAF1 61224 116 - 1 ----GGUACUAAAACAAAUAGCUAGGCACUGAAAGUGCACAAUUUCAAGCCUAUUAAAGUGAGCAGCACUAUUCAAAGUAAAUACUUGUAUGUACAUUUAAGUUAACUUUCACGCAAAAA ----................(((((((..(((((........))))).))))).....(((((.((....(((.((((((.(((....))).))).))).)))...)))))))))..... ( -17.90) >DroSim_CAF1 57013 112 - 1 ----GGUACUAAAACAAAUAGCUAGGCACUGAAAGUGCACAAUUUCAAGCCUAUUAAAGUGAGCAGCACUAUUCAAAGUACAUACUUG----UACAUUUAAGUUAACUUUCACGCAAAAA ----................(((((((..(((((........))))).))))).....(((((.((....(((.((((((((....))----))).))).)))...)))))))))..... ( -21.10) >DroEre_CAF1 60754 116 - 1 ----GGUACUAAAACAAAUAGCUAGGCACUGAAAGUGCACGAUUUCAAGCUUAUAAAAGUGAGCAGCACUAUUCAAAGUACAUACUUGUAUGUAUAUUUAAGUAAACUUUCACGCAAGAA ----.(((((..........((...))..(((((((((..(....)..((((((....)))))).))))).)))).)))))...((((..((.......(((....))).))..)))).. ( -24.30) >DroYak_CAF1 57610 116 - 1 ----GGUACUAAAACCAAUAGCUAGGCACUGAAAGUGCACAAUUUCAAGCCUAUAAAAGUGAGCAGCACUAUUCAAGGUACAUACUUGUAUGUAUGUUUAAGUAAACUUUCACGCAAAAA ----(((......)))....(((((((..(((((........))))).))))).....(((((.((.....((.((.(((((((....))))))).)).)).....)))))))))..... ( -26.10) >consensus ____GGUACUAAAACAAAUAGCUAGGCACUGAAAGUGCACAAUUUCAAGCCUAUAAAAGUGAGCAGCACUAUUCAAAGUACAUACUUGUAUGUACAUUUAAGUUAACUUUCACGCAAAAA ....................(((((((..(((((........))))).))))).....(((((.((.....((.((.(((((((....))))))).)).)).....)))))))))..... (-17.88 = -18.52 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:41 2006