Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,130,222 – 20,130,316 |
Length | 94 |
Max. P | 0.812138 |
Location | 20,130,222 – 20,130,316 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 90.13 |
Mean single sequence MFE | -27.76 |
Consensus MFE | -23.42 |
Energy contribution | -24.54 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.54 |
Structure conservation index | 0.84 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20130222 94 - 23771897 GAGCUUCGCUUGGAUUUAUGUAACAUUCAAAGAUCCAAAAUCAGGGGGCUGGGGACAGUUUUCACUAUCCAGCUUUCGUUAUCAAAUGGUGCUG------ .(((.(((.((((((((.((.......)).)))))))).....(..(((((((...(((....))).)))))))..).........))).))).------ ( -27.40) >DroSec_CAF1 44422 94 - 1 GAGCUUCGCUUGGAUUUAUGUAACAUUCAUAGGUCCAAAAUCAGGGGGCUGGGGACAGCUUUCAUUAUCCAGCUUUCGUUAUCAAAUGGUGCUG------ .........(((((((((((.......))))))))))).....(..(((((....)))))..)......((((..(((((....))))).))))------ ( -32.60) >DroSim_CAF1 44607 94 - 1 GAGCUUCGCUUGGAUUUAUGUAACAUUCAUAGGUCCAAAAUCAGGGGGCUGGGGACAGUUUUCACUAUCCAGCUUUCGUUAUCAAAUGGUGCUG------ .(((.(((.(((((((((((.......))))))))))).....(..(((((((...(((....))).)))))))..).........))).))).------ ( -31.00) >DroEre_CAF1 46436 93 - 1 GAGCUUCGCGUGGAUUUAUGUAAGAUUCAUAGGUCCAAAAUCAGG-GGCUGGGGCCACUUUUCACUAUGCAGCUUUCAUUAUCAAAUGGUGCUA------ .......(((((((((((((.......)))))))))......(((-(((....))).)))......))))(((..(((((....))))).))).------ ( -23.50) >DroYak_CAF1 48859 99 - 1 GAGCUUCGCGUGGAUUAAUGUAACAUUCAUGGGGCCAAAAUCAGG-GGCUGGGGCCAGUUUUCACUAUCCAGCUUUCAUUAUCAAAUGGUGCUCCACUGU ((((..(.(((((((.........))))))).)((((......((-(((((((...(((....))).)))))))))..........))))))))...... ( -24.29) >consensus GAGCUUCGCUUGGAUUUAUGUAACAUUCAUAGGUCCAAAAUCAGGGGGCUGGGGACAGUUUUCACUAUCCAGCUUUCGUUAUCAAAUGGUGCUG______ .(((.(((..((((((((((.......))))))))))......((((((((((...((......)).)))))))))).........))).)))....... (-23.42 = -24.54 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:44 2006