Locus 7498

Sequence ID	3L_DroMel_CAF1
Location	20,129,750 – 20,129,842
Length	92
Max. P	0.687138

overview

Window 0

Location	20,129,750 – 20,129,842
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	92.79
Mean single sequence MFE	-21.70
Consensus MFE	-18.94
Energy contribution	-18.94
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.28
Structure conservation index	0.87
SVM decision value	0.32
SVM RNA-class probability	0.687138
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20129750 92 + 23771897
AACUUUGCACUACCGUUUGCGUUGCUUCUCCUAGGCCAAAACCAGUUUGCGGCUUUCAUUGACAACGCAUUGUUGUCCGAGUGCACAUACGC
.....((((((..((..(((((((..((....(((((.(((....)))..))))).....)))))))))....))....))))))....... ( -23.60)
>DroSec_CAF1 43956 87 + 1
AACUUUGCACUACUGUUU-----GCUUCUCCUAGGCCAAAACCAGUUUGCGGCUUUCAUUGACAACGCAUUGUUGUCCGAGUGCACAUACUA
.....((((((.......-----.........(((((.(((....)))..))))).....((((((.....))))))..))))))....... ( -19.70)
>DroSim_CAF1 44141 87 + 1
AACUUUGCACUACUGUUU-----GCUUCUCCUAGGCCAAAACCAGUUUGCGGCUUUCAUUGACAACGCAUUGUUGUCCGAGUGCACAUACUA
.....((((((.......-----.........(((((.(((....)))..))))).....((((((.....))))))..))))))....... ( -19.70)
>DroEre_CAF1 45940 91 + 1
AACU-UGCACUACUGUUUGCGACGCUUCUCCUAGGCCGAAACCAGUUUGCGGCUUUCAUUGACAACGCAUUGUUGUCCGAGUGCACAUACUC
...(-((((........))))).((..(((..(((((((((....))).)))))).....((((((.....)))))).))).))........ ( -22.10)
>DroYak_CAF1 48322 91 + 1
AACUUUGCACUACUGUUUGCGUUGCUUCUCCUAGGCCGAAACCAGUUUGAGGCUUUCAUUGACAACGCAUUGUUGUCCGAGUGCACA-ACUC
.....((((((((....(((((((..((....(((((.(((....)))..))))).....))))))))).....))...))))))..-.... ( -23.40)
>consensus
AACUUUGCACUACUGUUUGCG__GCUUCUCCUAGGCCAAAACCAGUUUGCGGCUUUCAUUGACAACGCAUUGUUGUCCGAGUGCACAUACUC
.....((((((.....................(((((.(((....)))..))))).....((((((.....))))))..))))))....... (-18.94 = -18.94 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:43 2006