Locus 7497

Sequence ID 3L_DroMel_CAF1
Location 20,123,104 – 20,123,212
Length 108
Max. P 0.560913
window12189

overview

Window 9

Location 20,123,104 – 20,123,212
Length 108
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 69.76
Mean single sequence MFE -23.18
Consensus MFE -16.25
Energy contribution -16.29
Covariance contribution 0.04
Combinations/Pair 1.14
Mean z-score -0.89
Structure conservation index 0.70
SVM decision value 0.05
SVM RNA-class probability 0.560913
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20123104 108 + 23771897
UAAUUCCACACUCUCAACUCACAACU--------GUUUGUUUUCAAUGGCUUUCCGUUUUUCAGAGAGCUGUGCGACACCAUCAUGAACGUGGUUGGCUGCAUCAUGUGGAUCGCC
.......(((((((((((..((....--------))..)))...(((((....))))).....))))).)))((((..(((.(((((..(..(....)..).)))))))).)))). ( -27.10)
>DroSec_CAF1 37734 91 + 1
-----------------UAUAAAACU--------GAUUGUUUUCAAUGGUUUUACGUUUUCCAGAGAGCUGUGCGACACCAUCAUGAACGUGGUUGGCUGCAUCAUGUGGAUCGCC
-----------------..(((((((--------.((((....))))))))))).(((((....)))))...((((..(((.(((((..(..(....)..).)))))))).)))). ( -23.50)
>DroSim_CAF1 37620 91 + 1
-----------------UAUACAACU--------GUUUGUUUUCAAUGGUUUUCCGUUUUCCAGAGAGCUGUGCGACACCAUCAUGAACGUGGUUGGCUGCAUCAUGUGGAUCGCC
-----------------...(((.((--------.((((.....(((((....)))))...)))).)).)))((((..(((.(((((..(..(....)..).)))))))).)))). ( -24.60)
>DroYak_CAF1 41873 81 + 1
----------------------CACU--------GGUUGUUUUCAACAUUUUUC-----UACAGAGAACUGUGUGACACCAUCAUGAACGUGGUUGGCUGCAUCAUGUGGAUUGCU
----------------------...(--------(((.(((....(((.(((((-----....))))).)))..)))))))........(..(((.((........)).)))..). ( -18.30)
>DroAna_CAF1 33675 103 + 1
UGUUUCCAC-CACUCAGUUCCCAAUUAAAACCCAUGUUGUUUUCU------------AUUUCAGAGAACUCUGCGACACCAUCAUGAACGUGGUUGGAACCAUCAUGUGGAUCGCC
....(((((-......(((((.............(((.(((((((------------.....)))))))...)))..(((((.......))))).)))))......)))))..... ( -22.40)
>consensus
_________________UACACAACU________GGUUGUUUUCAAUGGUUUUCCGUUUUCCAGAGAGCUGUGCGACACCAUCAUGAACGUGGUUGGCUGCAUCAUGUGGAUCGCC
......................................((((((...................))))))...((((..(((.(((((..((((....)))).)))))))).)))). (-16.25 = -16.29 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:42 2006