Locus 7496

Sequence ID 3L_DroMel_CAF1
Location 20,122,161 – 20,122,252
Length 91
Max. P 0.565039
window12188

overview

Window 8

Location 20,122,161 – 20,122,252
Length 91
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 75.50
Mean single sequence MFE -32.80
Consensus MFE -12.87
Energy contribution -12.65
Covariance contribution -0.22
Combinations/Pair 1.24
Mean z-score -2.07
Structure conservation index 0.39
SVM decision value 0.06
SVM RNA-class probability 0.565039
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20122161 91 - 23771897
ACAGGUGCC---GUUCGAAAUGGGUUACUAAUU--CGUUGACGGUUCAACAUGUUCAGG----CUC-CGA--AGCCCAAUGAAACCCAGAUGCGCAUGCGCCA
...(((((.---((.((...((((((.......--.(((((....)))))....(((((----((.-...--))))...)))))))))....)).))))))). ( -28.20)
>DroSec_CAF1 36804 99 - 1
ACAGGUGCCGUCGUUCGAAAUGGGUUACUAAUU--UGUUGACGGCUCCCCAUGGGCAGGGGAACUCUCGC--CGCCCAAUGGAAUCCAGAUGCGCAUGCGCCA
...((.(((((((..((((.(((....))).))--)).))))))).))((((((((.((.((....)).)--))))).)))).........(((....))).. ( -40.00)
>DroSim_CAF1 36693 101 - 1
ACAGGUGCCGUCGUUCGAAAUGGGUUACUAAUU--UGUUGACGGUUCCCCAUGGGCAGAGGAACUCUCGCAGCGCCCAAUGGAAUCCAGAUGCGCAUGCGCCA
...((.(((((((..((((.(((....))).))--)).))))))).)).....(((.(((.....)))(((((((....(((...)))...)))).)))))). ( -37.40)
>DroEre_CAF1 38715 91 - 1
ACAGGUGCU---GUUCGAGAUGGGUUACUAAUU--UGUUGACGGUUCCCCAUGGGGAGG----UUC-CGA--AAGCAAAUAGAACCCAGAUGCGCAUGCGCCA
...((((((---((.((...((((((.(((.((--((((..((((((((....))))).----..)-)).--.)))))))))))))))..)).))).))))). ( -39.00)
>DroYak_CAF1 40927 91 - 1
ACAGGUGCC---AUUCGAAAUGGGUUACUAAUU--UGUUGACGGUUUCCCAUGGGGAGG----CUC-CGA--AAACAAAUAGAACCCAGAUGCGCAUGCGCCA
...(((((.---((.((...((((((.(((.((--((((..(((.(((((...))))).----..)-)).--.)))))))))))))))....)).))))))). ( -35.90)
>DroAna_CAF1 32770 81 - 1
ACAGGUGCG---AUCCGAAAUGGGUUACUAAUUUUUGUUGACUGUCG--------UUGG----UUU-CUA--GAG----AGAGAGGGAGAUGCGCAUGCUCCG
.((.(((((---((((.....))))).((..((((((..((((....--------..))----)).-.))--)))----)...))......)))).))..... ( -16.30)
>consensus
ACAGGUGCC___GUUCGAAAUGGGUUACUAAUU__UGUUGACGGUUCCCCAUGGGCAGG____CUC_CGA__AACCCAAUGGAACCCAGAUGCGCAUGCGCCA
...(((((....((.((...((((((..((((....)))).......((....))...........................))))))....)).))))))). (-12.87 = -12.65 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:41 2006