Locus 7495

Sequence ID 3L_DroMel_CAF1
Location 20,117,878 – 20,117,982
Length 104
Max. P 0.700129
window12187

overview

Window 7

Location 20,117,878 – 20,117,982
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 83.32
Mean single sequence MFE -26.88
Consensus MFE -15.04
Energy contribution -15.24
Covariance contribution 0.20
Combinations/Pair 1.17
Mean z-score -2.32
Structure conservation index 0.56
SVM decision value 0.35
SVM RNA-class probability 0.700129
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20117878 104 + 23771897
AGAAAUAAACGCCGCGAGCUACUUCUUGUGGGGACAAACAUUAAUCCACAGCUUGGAGGAGUGGGGGGGAGUGGGGAGGAGUGGAGGAGAUAGAUAUCAGGGGA
.........(.((.....(((((((((.((....))..((((..(((...((((....))))..)))..))))..)))))))))....(((....))).)).). ( -27.50)
>DroSec_CAF1 32433 100 + 1
AGAAAUAAACGCCGCCAGCUACUUCUUGUGGGGACAAACAUUAAUCCACAGCUUGGAGAAGUGGA--GGAGUGGGGA--AGUGGAGGAGAUAGGUAUCAGGGGA
.........(.((.((..(((((((((.((....))..((((..(((((..(.....)..)))))--..))))))))--))))).)).(((....))).)).). ( -29.50)
>DroSim_CAF1 32220 100 + 1
AGAAAUAAACGCCGCGAGCUACUUCUUGUGGGGACAAACAUUAAUCCACAGCUUGGAGGAGUGGG--GGAGUGGGGA--AGUGGAGGAGAUAGGUAUCAGGGGA
.........(.((((...(((((((((.((....))..((((..((((.....))))..))))))--)))))))...--.)))).)..(((....)))...... ( -26.80)
>DroEre_CAF1 34078 84 + 1
AGAAAUAAACGCCGCGAGCUAUUUCUUGUGGGGACAAACAUUAAUCCGCAGCUU------------------GGAGG--AGUGGAGGAGAUAGCAUUCAUGGGA
...........(((.((((((((((((.((....))..((((..((((.....)------------------)))..--)))).))))))))))..)).))).. ( -24.60)
>DroYak_CAF1 36342 89 + 1
AGAAAUAAACGCCGCGAGCUAUUUCUUGUGGGGACAAACAUUAAUCC--AGCUUGGUGG-----------GUGGAGG--AGUGGAGGGAAUAGGUAUCAUGGGA
...........(((.((.(((((((((.((....))..((((..(((--(.((....))-----------.))))..--)))).)))))))))...)).))).. ( -26.00)
>consensus
AGAAAUAAACGCCGCGAGCUACUUCUUGUGGGGACAAACAUUAAUCCACAGCUUGGAGGAGUGG___GGAGUGGGGA__AGUGGAGGAGAUAGGUAUCAGGGGA
...........((..((.(((((((((.((....))..((((..(((((.....................)))))....)))))))))).)))...))..)).. (-15.04 = -15.24 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:40 2006