Locus 7494

Sequence ID 3L_DroMel_CAF1
Location 20,116,042 – 20,116,160
Length 118
Max. P 0.576379
window12186

overview

Window 6

Location 20,116,042 – 20,116,160
Length 118
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 90.62
Mean single sequence MFE -21.90
Consensus MFE -17.67
Energy contribution -18.33
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.05
Structure conservation index 0.81
SVM decision value 0.09
SVM RNA-class probability 0.576379
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20116042 118 + 23771897
AGCUAAGAGCACGAAACACUGCUUUAAACCAUUUCUAGAAAUUCGAAUCAUGAGCAGCGAAAAAGUUUAACUGGGCUCUACUUAGAAUUAAUAACACUUAGUUAGCCUAAUUAAACAU
.((.....))......(.((((((......((((..(....)..))))...)))))).).....((((((.((((((..(((.((...........)).))).)))))).)))))).. ( -23.30)
>DroSec_CAF1 29819 105 + 1
AGCUAAGAGCACGAAACACUGCUUUAAACCAUUUCUGGA-------------AGCAGCGAAAAAGUUUAAUUGGUCUCUACUUAGAAUUAAUAACACUUAGUUAGCCUAAUUAAACAU
.((.....))......(.((((((....(((....))))-------------))))).).....((((((((((.((..(((.((...........)).))).)).)))))))))).. ( -21.20)
>DroSim_CAF1 30307 105 + 1
AGCUAAGAGCACGAAACACUGCUUUAAACCAUUUCUGGA-------------AGCAGCGAAAAAGUUUAAUUGGUCUCUACUUAGAAUUAAUAACACUUAGUUAGCCUAAUUAAACAU
.((.....))......(.((((((....(((....))))-------------))))).).....((((((((((.((..(((.((...........)).))).)).)))))))))).. ( -21.20)
>consensus
AGCUAAGAGCACGAAACACUGCUUUAAACCAUUUCUGGA_____________AGCAGCGAAAAAGUUUAAUUGGUCUCUACUUAGAAUUAAUAACACUUAGUUAGCCUAAUUAAACAU
.(((.((((((........))))))...(((....))).................)))......((((((((((.((..(((.((...........)).))).)).)))))))))).. (-17.67 = -18.33 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:39 2006