Locus 7492

Sequence ID 3L_DroMel_CAF1
Location 20,112,256 – 20,112,349
Length 93
Max. P 0.994550
window12181

overview

Window 1

Location 20,112,256 – 20,112,349
Length 93
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 92.74
Mean single sequence MFE -32.30
Consensus MFE -27.54
Energy contribution -28.74
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -2.21
Structure conservation index 0.85
SVM decision value 2.49
SVM RNA-class probability 0.994550
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20112256 93 + 23771897
---------UUUCAGAAUCGUUUGGCCAGCAUCUCAGCCGUAUACGGCUUUUUGGCGACGUUUCAUUAAGCGAGCGGAAAAUGACGCAUGCUCCGGCUCAUU
---------.....(((.((((..(((((......(((((....)))))..))))))))).))).......(((((((..(((...)))..))).))))... ( -28.10)
>DroSec_CAF1 26187 93 + 1
---------UUUCAGAAUCGUUUGGCCAGCAUCUCAGCCGUAUACGGCUUGUUGGCGACGUUUCAUUAAGCGAGCGGAAAAUGACGCAUGCUCCGGCUCAUU
---------.....(((.((((..(((((((....(((((....)))))))))))))))).))).......(((((((..(((...)))..))).))))... ( -33.80)
>DroSim_CAF1 26613 93 + 1
---------UUUCAGAAUCGUUUGGCCAGCAUCUCAGCCGUAUACGGCUUGUUGGCGACGUUUCAUUAAGCGAGCGGAAAAUGACGCAUGCUCCGGCUCAUU
---------.....(((.((((..(((((((....(((((....)))))))))))))))).))).......(((((((..(((...)))..))).))))... ( -33.80)
>DroEre_CAF1 28504 90 + 1
---------UUUCAGAAUCGU-UGCCCAGCAUCUCAGCCA--UACGGCUUGUUGGCGACGUUUCAUUAAGCGAGCGGAAAAUGACGCAUGCUCCGGCUCAUU
---------.....(((.(((-((((.((((....((((.--...))))))))))))))).))).......(((((((..(((...)))..))).))))... ( -31.90)
>DroYak_CAF1 26377 100 + 1
UCCCCGGAUUUUCAGAAUCGUUUGCCGAGCAUCUCAGCCG--UACGGCUUGUUGGCGACGUUUCAUUAAGCGAGCGGAAAAUGACGCAUGCUCCGGCUCAUU
...(((((......(((.((((.(((.((((....((((.--...))))))))))))))).))).....(((.(((........))).))))))))...... ( -33.90)
>consensus
_________UUUCAGAAUCGUUUGGCCAGCAUCUCAGCCGUAUACGGCUUGUUGGCGACGUUUCAUUAAGCGAGCGGAAAAUGACGCAUGCUCCGGCUCAUU
..............(((.((((..(((((((....(((((....)))))))))))))))).))).......(((((((..(((...)))..))).))))... (-27.54 = -28.74 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:34 2006