| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,110,351 – 20,110,443 |
| Length | 92 |
| Max. P | 0.564121 |
| Location | 20,110,351 – 20,110,443 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 81.30 |
| Mean single sequence MFE | -30.35 |
| Consensus MFE | -15.39 |
| Energy contribution | -15.95 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564121 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20110351 92 - 23771897 UGGCGGAAGCGUGGCCUGCUCAUAAAAAUUGGCAAACAAAGGAAACUUU-UUGCCGAAGGACGAGC----------CA-ACACGACAGUGCGUGA--GCAAAUGUG ..((....))(((....((((.......((((((((..(((....))))-))))))).....))))----------..-.))).(((.(((....--)))..))). ( -32.00) >DroPse_CAF1 22399 94 - 1 --------UGGUAGUCUGCUCAUAAAAAUUGGCAAACAAAGGCAACUUUUUCGCCGAAGGACGAGCC-GCG--GAGCA-GCACGACUGUGCGUGAGAGCAAGUGUG --------.......((((((.......(((((.((.((((....)))))).))))).((.....))-...--)))))-)((((..(((.(....).)))..)))) ( -28.30) >DroSec_CAF1 24274 93 - 1 UGGCGGAAGCGUGGCCUGCUCAUAAAAAUUGGCAAACAAAGGAAACUUU-UUGCCGAAGGACGAGC----------CGCACACGAAAGUGCGUGA--GCAAAUGUG ..((....))(((((.((.((.......((((((((..(((....))))-)))))))..)))).))----------))).((((....(((....--)))..)))) ( -34.20) >DroEre_CAF1 26464 91 - 1 UGCCGGAAGCGUGGCCUGCCCAUAAAAAUUGGCAAACAAAGGAAACUUU-UCGCCGAAGGAC-----------ACACA-ACACGACAGUGCGUGA--GCAAAUGUG .(.(....))(((.(((...........(((((....((((....))))-..)))))))).)-----------))...-.((((....(((....--)))..)))) ( -23.60) >DroYak_CAF1 24562 100 - 1 UGCCGGAAGCGUAGCCUGCUCAUAAAAAUUGGCAAACAAAGGAAACUUU-UUGCCGAAGGACGAGCACGAU--ACACA-ACACGACAGUGCGUGA--GCAAAUGUG ((((....).)))...(((((((.....((((((((..(((....))))-))))))).......((((...--.....-........))))))))--)))...... ( -30.39) >DroAna_CAF1 22861 100 - 1 -GACGGAAGCGUGGCCGGCUCAUAAAAAUUGGCAAACAAUGGAAACUU--UCGUCGAAGGACGCGCCAGGCCAAGCCA-ACACGACAGUGCGUGA--GCAAAUGUG -.......((.((((((((........((((.....))))(....)..--.((((....)))).))).))))).))..-.((((....(((....--)))..)))) ( -33.60) >consensus UGCCGGAAGCGUGGCCUGCUCAUAAAAAUUGGCAAACAAAGGAAACUUU_UCGCCGAAGGACGAGC_______A__CA_ACACGACAGUGCGUGA__GCAAAUGUG ........((((....(((.........(((((....((((....))))...))))).......................((((......))))...))).)))). (-15.39 = -15.95 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:33 2006