| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,107,505 – 20,107,595 |
| Length | 90 |
| Max. P | 0.736728 |
| Location | 20,107,505 – 20,107,595 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 72.47 |
| Mean single sequence MFE | -17.10 |
| Consensus MFE | -8.78 |
| Energy contribution | -9.62 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.736728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20107505 90 + 23771897 CAUGAGGAUAACCCGAUAACCGCAUUAGAUAAGCAUUUGAAAUAUGCUUAACCAACGUGAGACACCCCAACA-AUUUCCAUCCCUUAAUGC .....((.....)).......(((((((.(((((((.......))))))).....(....)...........-...........))))))) ( -14.20) >DroSec_CAF1 21485 91 + 1 CAUGAUAAUACCCGGAUAACCGUAUUAGUUAAGCAUUUGAAAUAUGCUUAACCAACGUGAGACACCGCAAUACAAUUCCAUCCUUUAAUGU .............(((.....(((((.(((((((((.......)))))))))....(((......))))))))...)))............ ( -17.70) >DroSim_CAF1 22069 91 + 1 CUUGGGGAUAACCGGAUAACCGUGUUAGUUAAGCAUUUGAAAUAUGCUUAACCAACGUGAGACACCGCAAUACAAUUUCAUCCUUUAAUGU .(((.((.(((((((....))).))))(((((((((.......)))))))))...(....)...)).)))..................... ( -21.60) >DroEre_CAF1 21662 73 + 1 UUUAAGGA---------------AUUAGUUAAGCACCUGAAAUAUGCUUAGCAAACGUGAGACAGCCCAAU---UUUCCAUCCUUAAAGGC ((((((((---------------....((((((((.........))))))))...(....)..........---......))))))))... ( -17.80) >DroYak_CAF1 22380 73 + 1 UUUAGAGA---------------UUUAGUUAAGCAGUUGAAAUAUGUUUAGCAAACGUGAGACACCCAAAU---UUUCCAUCUUUAAGGGC ((((((((---------------(...((((((((.........))))))))...(....)..........---.....)))))))))... ( -14.20) >consensus CUUGAGGAUA_CC_GAUAACCG_AUUAGUUAAGCAUUUGAAAUAUGCUUAACCAACGUGAGACACCCCAAUA_AUUUCCAUCCUUUAAUGC ...((((((..................(((((((((.......)))))))))....(((...)))..............))))))...... ( -8.78 = -9.62 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:32 2006