Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,238,412 – 2,238,546 |
Length | 134 |
Max. P | 0.991036 |
Location | 2,238,412 – 2,238,509 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 98.63 |
Mean single sequence MFE | -29.23 |
Consensus MFE | -29.15 |
Energy contribution | -28.93 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -3.12 |
Structure conservation index | 1.00 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.991036 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2238412 97 + 23771897 AAUAAUAAGCAAAUGAGCCAAACUGCCAAGUGUUGGCUUGUAAAUUGGCUGAUAAGUGCGCCGGAGACACUUGUAGCUGGCAAUCGCAAUUAUAAAU .(((((..(((.((.((((((((.((((.....))))..))...)))))).))...)))(((((..((....))..))))).......))))).... ( -29.70) >DroSec_CAF1 19369 97 + 1 AAUAAUAAGCAAAUGAGCCAGACUGCCAAGUGUUAGCUUGUAAAUUGGCUGAUAAGUGCGCCGGAGACACUUGUAGCUGGCAAUCGCAAUUAUAAAU .(((((..(((.((.((((((..(((.((((....)))))))..)))))).))...)))(((((..((....))..))))).......))))).... ( -29.00) >DroSim_CAF1 19451 97 + 1 AAUAAUAAGCAAAUGAGCCAGACUGCCAAGUGUUAGCUUGUAAAUUGGCUGAUAAGUGCGCCGGAGACACUUGUAGCUGGCAAUCGCAAUUAUAAAU .(((((..(((.((.((((((..(((.((((....)))))))..)))))).))...)))(((((..((....))..))))).......))))).... ( -29.00) >consensus AAUAAUAAGCAAAUGAGCCAGACUGCCAAGUGUUAGCUUGUAAAUUGGCUGAUAAGUGCGCCGGAGACACUUGUAGCUGGCAAUCGCAAUUAUAAAU .(((((..(((.((.((((((..(((.((((....)))))))..)))))).))...)))(((((..((....))..))))).......))))).... (-29.15 = -28.93 + -0.22)
Location | 2,238,412 – 2,238,509 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 98.63 |
Mean single sequence MFE | -24.58 |
Consensus MFE | -24.72 |
Energy contribution | -24.28 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -2.54 |
Structure conservation index | 1.01 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.980040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2238412 97 - 23771897 AUUUAUAAUUGCGAUUGCCAGCUACAAGUGUCUCCGGCGCACUUAUCAGCCAAUUUACAAGCCAACACUUGGCAGUUUGGCUCAUUUGCUUAUUAUU ....(((((.((((..(((((((.(((((((....(((......................))).)))))))..)).)))))....))))..))))). ( -23.95) >DroSec_CAF1 19369 97 - 1 AUUUAUAAUUGCGAUUGCCAGCUACAAGUGUCUCCGGCGCACUUAUCAGCCAAUUUACAAGCUAACACUUGGCAGUCUGGCUCAUUUGCUUAUUAUU ....(((((.((((..(((((((.(((((((....(((..........)))....((.....)))))))))..)).)))))....))))..))))). ( -24.90) >DroSim_CAF1 19451 97 - 1 AUUUAUAAUUGCGAUUGCCAGCUACAAGUGUCUCCGGCGCACUUAUCAGCCAAUUUACAAGCUAACACUUGGCAGUCUGGCUCAUUUGCUUAUUAUU ....(((((.((((..(((((((.(((((((....(((..........)))....((.....)))))))))..)).)))))....))))..))))). ( -24.90) >consensus AUUUAUAAUUGCGAUUGCCAGCUACAAGUGUCUCCGGCGCACUUAUCAGCCAAUUUACAAGCUAACACUUGGCAGUCUGGCUCAUUUGCUUAUUAUU ....(((((.((((..(((((((.(((((((....(((......................))).)))))))..)).)))))....))))..))))). (-24.72 = -24.28 + -0.44)
Location | 2,238,450 – 2,238,546 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 97.92 |
Mean single sequence MFE | -31.80 |
Consensus MFE | -31.80 |
Energy contribution | -32.13 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.19 |
Structure conservation index | 1.00 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2238450 96 - 23771897 AGUAACCGGGGACGCGUGGCUGCUGCCAGUUACCAGCAUUUAUAAUUGCGAUUGCCAGCUACAAGUGUCUCCGGCGCACUUAUCAGCCAAUUUACA .((((((((((((((.((...((((.(((((....(((........)))))))).))))..)).)))))))))).((........))....)))). ( -34.30) >DroSec_CAF1 19407 96 - 1 AGUAACAGGGUACGCGUGGCUGCUGCCAGUUACGAGCAUUUAUAAUUGCGAUUGCCAGCUACAAGUGUCUCCGGCGCACUUAUCAGCCAAUUUACA .((((..((..((((.((...((((.(((((....(((........)))))))).))))..)).))))..))(((..........)))...)))). ( -27.50) >DroSim_CAF1 19489 96 - 1 AGUAACAGGGGACGCGUGGCUGCUGCCAGUUACGAGCAUUUAUAAUUGCGAUUGCCAGCUACAAGUGUCUCCGGCGCACUUAUCAGCCAAUUUACA .((((..((((((((.((...((((.(((((....(((........)))))))).))))..)).))))))))(((..........)))...)))). ( -33.60) >consensus AGUAACAGGGGACGCGUGGCUGCUGCCAGUUACGAGCAUUUAUAAUUGCGAUUGCCAGCUACAAGUGUCUCCGGCGCACUUAUCAGCCAAUUUACA .((((..((((((((.((...((((.(((((....(((........)))))))).))))..)).))))))))(((..........)))...)))). (-31.80 = -32.13 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:14 2006