Locus 7485

Sequence ID 3L_DroMel_CAF1
Location 20,085,678 – 20,085,778
Length 100
Max. P 0.572555
window12168

overview

Window 8

Location 20,085,678 – 20,085,778
Length 100
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 82.35
Mean single sequence MFE -39.38
Consensus MFE -26.84
Energy contribution -27.90
Covariance contribution 1.06
Combinations/Pair 1.15
Mean z-score -1.61
Structure conservation index 0.68
SVM decision value 0.08
SVM RNA-class probability 0.572555
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20085678 100 + 23771897
GCGGCGGGUUCUUCGUCGACGUGGAGAAGGCCAUGCCACGACGCAGGGGAACUCUGCGGGAGCCAC------GGAGACAACAGGACGAAGGACACGCAUUAGCAAC
((.(((.((((((((((...((((....(((...)))....(((((((...)))))))....))))------(....).....)))))))))).)))....))... ( -44.60)
>DroSec_CAF1 268 100 + 1
GCGGCGGGUUCUUCGUCGACGUGGAGAAGGCCAUGCCACGGCGCAGGGGAACUCUGCGGGAGCCAC------GGAGACAACGGGACGAAGGACACGCAUUAGCAAC
((.(((.((((((((((...((((....(((...)))....(((((((...)))))))....))))------(....).....)))))))))).)))....))... ( -44.30)
>DroSim_CAF1 268 100 + 1
GCGGCGGGUUCUUCGUCGACGUGGAGAAGGCCAUGCCACGGCGCAGGGGAACUCUGCGGGAGCCAC------GGAGACAACGGGACGAAGGACACGCAUUAGCAAC
((.(((.((((((((((...((((....(((...)))....(((((((...)))))))....))))------(....).....)))))))))).)))....))... ( -44.30)
>DroEre_CAF1 287 100 + 1
GCGGCGGAUUCUUCGUCGACGUGGAGAAGGCCAUGCCACGACGCAGGGGAACUCUACGGGAGCCAC------GGAGACAACAGGACGAAGGACACGCAUUAGCAAC
((.(((..(((((((((..(((((((....((.(((......)))..))..)))))))........------(....).....)))))))))..)))....))... ( -39.20)
>DroMoj_CAF1 3238 87 + 1
GUGGUGGGUUCUUCGUGGACGUGGAGAAUGCCAUGCCCCGUUUCAGCGGCACUCUAG---AGACAC------GAA------CGAACA-GGUA--CGCAUUUAGG-U
(((....((((((((((....(((((..((((.((........))..))))))))).---...)))------)))------.)))).-....--))).......-. ( -25.50)
>DroAna_CAF1 392 106 + 1
GCGGCGGAUUCUUCGUCGAGGUGGAGAAGGCCAUGCCACGGCGCAGCGGGACUCUGGGGUAGCCACACGAGCGGGAACGACAGGACGAAGGACACGCAUUAGCAAC
((.(((..(((((((((...(((.....(((...)))..(((((..(((....)))..)).))).)))..(((....)).)..)))))))))..)))....))... ( -38.40)
>consensus
GCGGCGGGUUCUUCGUCGACGUGGAGAAGGCCAUGCCACGGCGCAGGGGAACUCUGCGGGAGCCAC______GGAGACAACAGGACGAAGGACACGCAUUAGCAAC
((.(((..(((((((((..(((((((....((.(((......)))..))..)))))))..............(....).....)))))))))..)))....))... (-26.84 = -27.90 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:22 2006