Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,081,732 – 20,081,826 |
Length | 94 |
Max. P | 0.856828 |
Location | 20,081,732 – 20,081,826 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -32.48 |
Consensus MFE | -21.05 |
Energy contribution | -22.55 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.01 |
Structure conservation index | 0.65 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20081732 94 + 23771897 GUGGAGGAG---CAGGAGGACCG-GGACAGAGUUUUCCCUGCUCGGGGCUCAUUAUUUCCCCGAGUAAUAUGCUAAAAUGACGGGAACGCACUCACAC ((((((.((---((((((((((.-.....).))))))).(((((((((..........)))))))))...))))....((.((....))))))).))) ( -34.70) >DroSec_CAF1 19535 95 + 1 GUGGAGGAG---GAGGAGGACCCGGACGAGAGUGUUCCCUGCUCGGGGCUCAUUAUUUCCCCGAGUAAUAUGCUAAAAUGACGGGAACGCACUCACAC (((.....(---(.(.....)))....(((.(((((((((((((((((..........))))))))).(((......)))..)))))))).))).))) ( -35.40) >DroSim_CAF1 18075 98 + 1 GUGGAGGAGGAGGAGGAGGACCCGGGCCAGAGUGUUCCCUGCUCGGGGCUCAUUAUUUCCCCGAGUAAUAUGCUAAAAUGACGGGAACGCACUCACAC ((((((..((.((.(.....)))...))...(((((((((((((((((..........))))))))).(((......)))..)))))))).))).))) ( -38.00) >DroEre_CAF1 18169 89 + 1 ------GAG---CAGGAGAACCCGGGGCAGCGUGUUCCCAGCUCGGGGCUCAUUAUUUCCCCGAGUAAUAUGCUAAAAUGACGGGAACGCACUUACAC ------..(---(.((.....))...))((.((((((((.((((((((..........))))))))..(((......)))..)))))))).))..... ( -32.30) >DroYak_CAF1 21013 89 + 1 ------GAG---GAGGAGAAGCCGAGGCACCGUGUUCCCUGCUCGGGGCUCAUUAUUUCCCCGAGUAAUAUGCUAAAAUGACGGGAACGCACUCACAC ------...---(((.....((....))...(((((((((((((((((..........))))))))).(((......)))..)))))))).))).... ( -34.30) >DroPer_CAF1 17953 73 + 1 ----AGGAG---CAGCG-------G---------GCCCCAGCUCGGGGCUCAUUAUUUCCCCAAGUAAUAUGCUAAAAUGACUCGAACACACAGGC-- ----...((---((..(-------(---------(((((.....)))))))(((((((....))))))).))))......................-- ( -20.20) >consensus ____AGGAG___CAGGAGGACCCGGGCCAGAGUGUUCCCUGCUCGGGGCUCAUUAUUUCCCCGAGUAAUAUGCUAAAAUGACGGGAACGCACUCACAC ...............................((((((((.((((((((..........))))))))..(((......)))..))))))))........ (-21.05 = -22.55 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:21 2006