Locus 7482

Sequence ID 3L_DroMel_CAF1
Location 20,064,594 – 20,064,684
Length 90
Max. P 0.965035
window12164

overview

Window 4

Location 20,064,594 – 20,064,684
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 92.22
Mean single sequence MFE -21.49
Consensus MFE -19.84
Energy contribution -19.96
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.63
Structure conservation index 0.92
SVM decision value 1.58
SVM RNA-class probability 0.965035
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20064594 90 + 23771897
AAUGUCCAUCUGGAUAUUCUUUUCCAGCUCUACCUGAAUAUUCUCCUCCAGCUCCAGGUCUUGUUUCUCGGCCUGCAGAGCCUGGCAUUC
(((((((....))))))).....((((((((..(((............)))...((((((.........)))))).)))).))))..... ( -22.90)
>DroSec_CAF1 1585 90 + 1
AAUGUCAAUCUGGAUAUUCUCCUCCAGCUCCACUUGAAUAUUCUCGUCCAGCUCCAGGUCUUGUUUCUCCGCCUGCAGAGCCUGACAUUC
(((((((....((((((((................)))))))).......(((((((((...........)))))..)))).))))))). ( -21.59)
>DroSim_CAF1 1429 90 + 1
AAUGUCAAUCUGGAUAUUCUGCUCCACCUCCACCUGAAUAUUCUCCUCCAGCUCCAGGUCUUGUUUCUCCGCCUGCAGAGCCUGGCAAUC
..(((((....((((((((................)))))))).......(((((((((...........)))))..)))).)))))... ( -19.99)
>consensus
AAUGUCAAUCUGGAUAUUCUCCUCCAGCUCCACCUGAAUAUUCUCCUCCAGCUCCAGGUCUUGUUUCUCCGCCUGCAGAGCCUGGCAUUC
((((((.....((((((((................)))))))).......(((((((((...........)))))..))))..)))))). (-19.84 = -19.96 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:18 2006