Locus 7481

Sequence ID 3L_DroMel_CAF1
Location 20,062,935 – 20,063,037
Length 102
Max. P 0.859764
window12163

overview

Window 3

Location 20,062,935 – 20,063,037
Length 102
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 88.71
Mean single sequence MFE -24.85
Consensus MFE -19.98
Energy contribution -20.54
Covariance contribution 0.56
Combinations/Pair 1.20
Mean z-score -1.94
Structure conservation index 0.80
SVM decision value 0.82
SVM RNA-class probability 0.859764
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20062935 102 - 23771897
AGUCACUAAACAGCUGAGCGCAGUGUUACCAGUCGGCGAUGCGGAUUUCACCUCAAGUCCGCGCGAGCUCAAAAAAAAAAUACUGCAAAACUCACCACUUUC
............(.((((.((((((((.((....))((.(((((((((......))))))))))).............))))))))....)))).)...... ( -26.10)
>DroSec_CAF1 23840 101 - 1
AGUCACUAAACAGCUGAGCGCAGUGUUACCAGACGACGAUGCGGAUUUCACCUCAAGUCCGCACGAGCUCAAAA-AAAAAUACUGCAAAACUCACCACUUUC
............(.((((.((((((((.......((((.(((((((((......)))))))))))...))....-...))))))))....)))).)...... ( -24.34)
>DroSim_CAF1 23498 101 - 1
AGUCACUAAACAGCUGAGCGCAGUGUUACCAGACGGCGAUGUGGACUUCACCUCAAGUCCGCACGAGCUCAAAA-AAAAAUACUGCAAAACUCACCACUUUC
............(.((((.((((((((.......(((..(((((((((......)))))))))...))).....-...))))))))....)))).)...... ( -27.56)
>DroYak_CAF1 19006 102 - 1
AGUCACUAAACAGCUGAGCGCAGUGUUACCAGUCGGCGAUGCGGAUUUUUCCCCAAAGGCGCACAAGCUCCAAUGUAAAAUACUAAAAAGUCCACCACUUUU
....((.....((((..((((.((((..((....))..))))(((....)))......))))...)))).....)).........((((((.....)))))) ( -21.40)
>consensus
AGUCACUAAACAGCUGAGCGCAGUGUUACCAGACGGCGAUGCGGAUUUCACCUCAAGUCCGCACGAGCUCAAAA_AAAAAUACUGCAAAACUCACCACUUUC
............(.((((.((((((((.......(((..(((((((((......)))))))))...))).........))))))))....)))).)...... (-19.98 = -20.54 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:17 2006