Locus 7480

Sequence ID 3L_DroMel_CAF1
Location 20,060,880 – 20,060,971
Length 91
Max. P 0.817490
window12162

overview

Window 2

Location 20,060,880 – 20,060,971
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 81.85
Mean single sequence MFE -19.65
Consensus MFE -15.57
Energy contribution -15.27
Covariance contribution -0.30
Combinations/Pair 1.23
Mean z-score -1.86
Structure conservation index 0.79
SVM decision value 0.67
SVM RNA-class probability 0.817490
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20060880 91 + 23771897
UUUGGCUAAGCGAAUUUGCUUCCUUUCAGCCCC--------AUACGAAACAAAAGACUUAGGAAGCGAACGUGCAAAUAUAGAACAACGCCAAACCAAA
((((((...(((..((((((((((.((......--------.............))...))))))))))..))).......(.....)))))))..... ( -21.41)
>DroVir_CAF1 8553 92 + 1
----ACAUAGCGAAUUUGUUUCCUUUUCGCAUAAUGCACAGACUUAAAACAAAAGACUUAGGAAACAAACGCGCCAAAUUAA-ACAUAACGAAAAUG--
----.....(((..((((((((((....((.....)).....(((.......)))....))))))))))..)))........-..............-- ( -18.00)
>DroSec_CAF1 21789 91 + 1
UUUGGCUAAGCGAAUUUGCUUCCUUUCAGCCCC--------ACACGAAACAAAAGACUUAGGAAGCGAACGCGCAAAUGUAGAACAACGCGAAACCAAA
.((((....(((..((((((((((.((......--------.............))...))))))))))..)))...(((........)))...)))). ( -20.61)
>DroSim_CAF1 21472 91 + 1
UUUGGCUAAGCGAAUUUGCUUCCUUUCAGCCCC--------ACACGAAACAAAAGACUUAGGAAGCGAACGCGCAAAUAUAGAACAACGCGAAACCAAA
.((((....(((..((((((((((.((......--------.............))...))))))))))..)))..........(.....)...)))). ( -18.91)
>DroEre_CAF1 22498 91 + 1
UGUGGCUAAGCGAAUUUGCUUCCUUUCAGCCGC--------ACGCGAAACAAAAGACUUAGGAAGCAAACGCGAAAAUGUAGAACAACGCGAAAUCGAA
..........(((.(((((((((((((.((...--------..)))))...........))))))))))((((....((.....)).))))...))).. ( -19.30)
>DroYak_CAF1 16522 91 + 1
UUUGGCUAAGCGAAUUUGCUUCCUUUCAGCCGC--------ACACGAAACAAAAGACUUAGGAAGCGAACGCGAAAAUGUAGAACAACGCGAAAUCGUA
.........((((.((((((((((...((.(..--------.............).)).))))))))))((((....((.....)).))))...)))). ( -19.66)
>consensus
UUUGGCUAAGCGAAUUUGCUUCCUUUCAGCCCC________ACACGAAACAAAAGACUUAGGAAGCGAACGCGCAAAUGUAGAACAACGCGAAACCAAA
.........(((..((((((((((...................................))))))))))..)))......................... (-15.57 = -15.27 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:16 2006