Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,237,944 – 2,238,062 |
Length | 118 |
Max. P | 0.654682 |
Location | 2,237,944 – 2,238,062 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 68.17 |
Mean single sequence MFE | -25.32 |
Consensus MFE | -11.09 |
Energy contribution | -8.85 |
Covariance contribution | -2.24 |
Combinations/Pair | 1.41 |
Mean z-score | -1.73 |
Structure conservation index | 0.44 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654682 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2237944 118 + 23771897 AAUGGGAACGGCCUGUUCCCAGGCACUGGGACACACCCACGACCCCUUUCGCCGGCCACUCACCAGGCGUAAUUUGGCUAAU--UCAUGCGUAAACAUUUGCGCUUGUUUACCCAACAUU ..((((...(((((((((((((...)))))).)))....(((......)))..))))......(((((((((((((((....--....)).))))...)))))))))....))))..... ( -37.30) >DroPse_CAF1 18784 95 + 1 AUUGGAACCACUCGGUUCUU------------ACACUUACAAUCCCAU-------------AUCUGGUUGAAUUCCCCUAAAAGACUCACGUAAACAUUUACGAUUGUUUAUUUAACAAU ...((((((....)))))).------------.......(((((....-------------....)))))...................(((((....)))))((((((.....)))))) ( -14.70) >DroSec_CAF1 18868 110 + 1 AAUGGGAACGGCCUGUUCCCAG--------ACACACCCACGACCCCUUUCGCCGGCCAUUCAUCAGGCGUAAUUUGGCUAAU--UCAUGCGUAAACAUUCGCGCUUGUUUACCCAACAUU ..((((...((((((((....)--------)))......(((......)))..))))......(((((((..((((((....--....)).)))).....)))))))....))))..... ( -25.60) >DroSim_CAF1 18938 118 + 1 AAUGGGAACGGCCUGUUCCCAGGCACUGGGACACACCCACGACCCCUUUCGCCGGCCACUCAUCAGGCGUAAUUUGGCUAAU--UCAUGCGUAAACAUUCGCGCUUGUUUACCCAACAUU ..((((...(((((((((((((...)))))).)))....(((......)))..))))......(((((((..((((((....--....)).)))).....)))))))....))))..... ( -34.30) >DroPer_CAF1 16755 95 + 1 AUUGGAACCACUCGGUUCUU------------ACACUUACAAUCCCAU-------------AUCUGGUUGAAUUCUCCUAAAAGACUCACGUAAACAUUUACGAUUGUUUAUUUAACAAU ...((((((....)))))).------------.......(((((....-------------....)))))...................(((((....)))))((((((.....)))))) ( -14.70) >consensus AAUGGGAACGGCCUGUUCCCAG________ACACACCCACGACCCCUUUCGCCGGCCA_UCAUCAGGCGUAAUUUGGCUAAU__UCAUGCGUAAACAUUUGCGCUUGUUUACCCAACAUU ..((((.(((.((((................................................))))))).....................((((((........))))))))))..... (-11.09 = -8.85 + -2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:11 2006