Locus 7479

Sequence ID 3L_DroMel_CAF1
Location 20,047,213 – 20,047,332
Length 119
Max. P 0.578359
window12161

overview

Window 1

Location 20,047,213 – 20,047,332
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.82
Mean single sequence MFE -29.12
Consensus MFE -15.86
Energy contribution -17.78
Covariance contribution 1.92
Combinations/Pair 1.10
Mean z-score -2.52
Structure conservation index 0.54
SVM decision value 0.09
SVM RNA-class probability 0.578359
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20047213 119 - 23771897
AACUUGAUUGAAUGCUCAUAAUCAACGAUCUUCGAUCUGGGAUGGG-AUCUCUGGAAUGGGAACCGGACACUGUUUACCAAUCCAAGUAUCAAUCAAUAAAUAAUUAUUAGUUUCAGCCA
...((((((((.((((.................(((((......))-)))..((((.(((((((.(....).)))).))).))))))))))))))))....................... ( -25.10)
>DroSec_CAF1 17424 114 - 1
-ACUUGAUUGAAUGCUCAUACCCAACGAUCUUCGAUCUGGGAUGGG-AUCUCUGGAAUGGAAACCGGACACUGUUUACCAAUCCAAGUAUCAAUCAAUAAAUAAUUAUUAGUUUCA----
-..((((((((...(((((.((((..((((...)))))))))))))-.....((((.(((((((.(....).)))).))).))))....))))))))...................---- ( -31.30)
>DroSim_CAF1 17071 114 - 1
-ACUUGAUUGAAUGCUCAUACCCAACGAUCUUCGAUCUGGGAUGGG-AUCUCUGGAAUGGAAACCGGACACUGUUUACCAAUCCAAGUAUCAAUCAAUAAAUAAUUAUUAGUUUCA----
-..((((((((...(((((.((((..((((...)))))))))))))-.....((((.(((((((.(....).)))).))).))))....))))))))...................---- ( -31.30)
>DroEre_CAF1 17788 113 - 1
-ACUUCAU-AAGAGCUCACACCAAACGAUCUU-----UGGGAUAGGAAUCCCUGGAAUGGAAAGCGGACCCUGUUUACCAAUCCAAGUAUCAAUCAAUAAGUAAUUAUUAGCUUUCGCCA
-.......-.((((((..........((((((-----.(((((....))))).(((.(((.((((((...)))))).))).)))))).)))....(((((....)))))))))))..... ( -26.70)
>DroYak_CAF1 12808 118 - 1
-ACAUCUC-UAAAGCUCAUUUCAAACGAUCUUCGAUCUGGGAUGGGUAUUGCUGGAUUGGAAACCGGACACUGUUUACCAAUUCAAGUAUCAAUCAAUAAAUAAUUAUUGGUUUCAGCAC
-.......-....((((((..((...((((...))))))..))))))..(((((((((((((((.(....).)))).))))))).......(((((((((....)))))))))..)))). ( -31.20)
>consensus
_ACUUGAUUGAAUGCUCAUACCCAACGAUCUUCGAUCUGGGAUGGG_AUCUCUGGAAUGGAAACCGGACACUGUUUACCAAUCCAAGUAUCAAUCAAUAAAUAAUUAUUAGUUUCAGC__
...(((((((.(((((.........(.(((((......))))).).......((((.(((((((.(....).)))).))).))))))))))))))))....................... (-15.86 = -17.78 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:15 2006