Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,038,262 – 20,038,356 |
Length | 94 |
Max. P | 0.746568 |
Location | 20,038,262 – 20,038,356 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 94.24 |
Mean single sequence MFE | -23.55 |
Consensus MFE | -20.69 |
Energy contribution | -20.47 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.13 |
Structure conservation index | 0.88 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746568 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20038262 94 + 23771897 CACCCACACAUUGCAGCCAUUUGUGUAAUAGUGUGUGUCUGUCUAUGUGUGUUGCUUGUGCUUGGGUUUGUUGGUAUUAUUGACAAAUUCUAUU ....(((((((.((((.(((..............))).))))..)))))))..((....))..((((((((..((...))..)))))))).... ( -23.44) >DroSec_CAF1 5333 90 + 1 CACCCACACAUUGCAGGUGUUUGUGUAAUAGUGUGUG----UCUAUGUGUGUUGCUUGUGCUUGAGUUUGUUGGUAUUAUUGACAAAUUCUAUU ....(((((((.(((.(..((........))..).))----)..)))))))..((....))..((((((((..((...))..)))))))).... ( -23.60) >DroSim_CAF1 6291 90 + 1 CACCCACACAUUGCAGGUGUUUGUGUAAUAGUGUGUG----UCUAUGUGUGUUGCUUGUGCUUGAGUUUGUUGGUAUUAUUGACAAAUUCUAUU ....(((((((.(((.(..((........))..).))----)..)))))))..((....))..((((((((..((...))..)))))))).... ( -23.60) >consensus CACCCACACAUUGCAGGUGUUUGUGUAAUAGUGUGUG____UCUAUGUGUGUUGCUUGUGCUUGAGUUUGUUGGUAUUAUUGACAAAUUCUAUU ....(((((((((((........)))))).)))))..................((....))..((((((((..((...))..)))))))).... (-20.69 = -20.47 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:12 2006