Locus 7476

Sequence ID 3L_DroMel_CAF1
Location 20,036,999 – 20,037,090
Length 91
Max. P 0.680995
window12157

overview

Window 7

Location 20,036,999 – 20,037,090
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 94.14
Mean single sequence MFE -44.33
Consensus MFE -40.46
Energy contribution -40.40
Covariance contribution -0.06
Combinations/Pair 1.11
Mean z-score -1.52
Structure conservation index 0.91
SVM decision value 0.31
SVM RNA-class probability 0.680995
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20036999 91 - 23771897
ACGCCCGAGCGGGCAGAGGCCUUGGACUGUGCCACAGCCCUCAACGAGGGCGUGGUAUCCGCGGAUCCGGGCGGCAGCGGCGGUACGCCAA
.(((((....((((....)))).((((((((((((.((((((...)))))))))))....)))).)))))))).....((((...)))).. ( -46.20)
>DroSec_CAF1 4078 91 - 1
ACGCCCGAGCGGGCAGAGGCCUUGGACUGUGCCACAGCCCUCAACGAGGGCGUGGCAUCGGCGGAUCCGGGCGGCAGCGGCGGUACGCCAA
.(((((....((((....)))).((((((((((((.((((((...)))))))))))....)))).)))))))).....((((...)))).. ( -47.60)
>DroEre_CAF1 7968 91 - 1
ACGCCCGAGCGGGCAGAGGCCUUGGACUGCGCCACAGCCCUAAACGAGGGCGUGGCAUCGGCGGAUGCGGGCGGCAGCGGCGGCACACCAA
..((((....))))....(((.(.(.(((((((.(((((((.....))))).))(((((....))))).))).))))).).)))....... ( -42.30)
>DroYak_CAF1 4088 91 - 1
ACGCCCGAGCGGGCAGAGGCCUUGGACUGUGCCACAGCCCUAAACGAGGGUGUGGCAUCGGCGGACCCGGGCGGAAGCGGCGGUACACCAA
..((((....))))....(((((.(.((((((((((.((((.....))))))))))).)))).)).....((....)))))((....)).. ( -41.20)
>consensus
ACGCCCGAGCGGGCAGAGGCCUUGGACUGUGCCACAGCCCUAAACGAGGGCGUGGCAUCGGCGGAUCCGGGCGGCAGCGGCGGUACACCAA
.((((((...((((....))))....(((((((((.(((((.....))))))))))....))))...)))))).....((((...)))).. (-40.46 = -40.40 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:11 2006