Locus 7473

Sequence ID 3L_DroMel_CAF1
Location 20,034,703 – 20,034,823
Length 120
Max. P 0.998270
window12150

overview

Window 0

Location 20,034,703 – 20,034,823
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 91.06
Mean single sequence MFE -34.19
Consensus MFE -33.40
Energy contribution -32.54
Covariance contribution -0.86
Combinations/Pair 1.24
Mean z-score -1.90
Structure conservation index 0.98
SVM decision value 3.05
SVM RNA-class probability 0.998270
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20034703 120 - 23771897
AGCAACAUACAACUAGCCUGUGUAGUUCAACGAAUCUGGCUGCUCAUCUCGAACAUAUGCCACGGCUUGCUAGCCGGUCUAGCUCUGGCCCAUCUACUCUUCGUGCUGAGCAGCCACCCC
.(.((((((((.......))))).))))........((((((((((.(.((((..........((((.(((((.....)))))...)))).........)))).).)))))))))).... ( -37.41)
>DroSec_CAF1 1841 120 - 1
AGCAACAUACAACUAGCCUGUGUAGUUCAACGAAUCUGGCUGCUCAUCUCGAAUAUAUGCCACGGCUUGCUAGCCGGUCUAGCUCUGGCCCACCUACUCUUCGUGCUGAGCAGCCACCCC
.(.((((((((.......))))).))))........((((((((((.(.((((..........((((.(((((.....)))))...)))).........)))).).)))))))))).... ( -37.41)
>DroSim_CAF1 1843 119 - 1
AGCAACAUACAACUAGCUUGUGUAGUUCAACGAAUCUGGCUGUUCAUCUCGAAUAUAUGCCACGGCUUGCUAGCCGGUCUAGCUCUGGCCCAC-UACUCUUCGUGCUGAGCAGCCACCCC
.(.(((((((((.....)))))).))))........((((((((((.(.((((..........((((....))))((((.......))))...-.....)))).).)))))))))).... ( -35.80)
>DroEre_CAF1 5911 120 - 1
AGCAACAUACAACUAGCCUGCGUAGUCCAACGAAUCUGGCUGCUCAUCUCGAACAUAUGCCACGGCUUGCUAGCCGGUCUAGCUCUGGCCCACCUACUCUUCGUGCUGAGCAGCCACCCC
.(((..............)))...............((((((((((.(.((((..........((((.(((((.....)))))...)))).........)))).).)))))))))).... ( -35.25)
>DroWil_CAF1 116938 120 - 1
AGUAAUAUACAAUUGGCCUGUGUAAUUCAACGAAUUUGGCUACUCAUUUCAAAUAUAUGCCAUGGCCUGUUAGCUGGUCUAGCAUUGGCUCAUUUACUUUUUGUAUUAAGCAGUCAUCCC
.((...((((((.(((((.((((.............((((..................)))).((((........))))..)))).))).))........))))))...))......... ( -21.87)
>DroYak_CAF1 1734 120 - 1
AGCAACAUACAACUAGCCUGUGUAGUUCAACGAAUCUGGCUGCUCAUCUCGAACAUAUGCCACGGCUUGCUAGCCGGUCUAGCUCUGGCCCACCUACUCUUCGUGCUGAGCAGCCACCCC
.(.((((((((.......))))).))))........((((((((((.(.((((..........((((.(((((.....)))))...)))).........)))).).)))))))))).... ( -37.41)
>consensus
AGCAACAUACAACUAGCCUGUGUAGUUCAACGAAUCUGGCUGCUCAUCUCGAACAUAUGCCACGGCUUGCUAGCCGGUCUAGCUCUGGCCCACCUACUCUUCGUGCUGAGCAGCCACCCC
.(.((((((((.......))))).))))........((((((((((.(.((((..........((((.(((((.....)))))...)))).........)))).).)))))))))).... (-33.40 = -32.54 +  -0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:05 2006