Locus 7472

Sequence ID 3L_DroMel_CAF1
Location 20,034,183 – 20,034,290
Length 107
Max. P 0.775147
window12149

overview

Window 9

Location 20,034,183 – 20,034,290
Length 107
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 85.75
Mean single sequence MFE -31.82
Consensus MFE -26.42
Energy contribution -26.90
Covariance contribution 0.48
Combinations/Pair 1.14
Mean z-score -1.70
Structure conservation index 0.83
SVM decision value 0.54
SVM RNA-class probability 0.775147
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20034183 107 + 23771897
ACUGAG-------CAUUCCCUUCUUGGCCACCUAUUUUUAGCCGCUCGUUGACGAAGGUUGCGUGGUAGGCCAAAUUGGCUUUUAAUCAAGUCAAAGGACAUCGAAAGCCC-AAA
..((.(-------(.((((((..(((((((((......(((((..(((....))).)))))...))).)))))).(((((((......)))))))))).....))).)).)-).. ( -30.20)
>DroSec_CAF1 1316 114 + 1
ACUGAGCACUAAGCAUUCCCUUCUUGGCCUCCUAUUUUUAGCCGCUCUUUUACGAAGGUUGCGUGGUAGGCCAAAUUGGCUUUUAAUCAAGCCAAAGGACAUCGAAAGCCC-AAA
..(((((.....))..(((....(((((((.((((...(((((..((......)).))))).)))).))))))).(((((((......))))))).)))..))).......-... ( -30.90)
>DroSim_CAF1 1315 114 + 1
ACUGAGCACUAAGCAUUCCCUUCUUGGCCUUCUAUUUUUAGCCGCUCGUUGACGAAGGUUGCGUGGUAGGCCAAAUUGGCUUUUAAUCAAGCCAAAGGACAUCGAAAGCCC-AAA
..(((((.....))..(((....(((((((.((((...(((((..(((....))).))))).)))).))))))).(((((((......))))))).)))..))).......-... ( -33.60)
>DroEre_CAF1 5438 105 + 1
AA--------AGGAACUCCCUCCUGGGUCUCCUAUUUUUAGCCGCUUGUUGGCGAAGGUUGCGUGGC-GGCCAAAUGGGCUUUUAAUCAAGCCAAAGGACAUCGAAAGCUC-AAA
..--------((((...(((....)))..)))).......((((((...((((....))))...)))-)))....((((((((..((....((...))..))..)))))))-).. ( -33.30)
>DroYak_CAF1 1203 108 + 1
AA-------AAAGAAUUCCCUCCUUGGCCUCCUAUUUUUAGCUGCUUGUUGGCGAAGGUUGCGUGGUAGGCCAAAUUGGCUUUUAAUCUAGCCAAAGGACAUCGAAAACUCGAAA
..-------...........((((((((((.((((...(((((..(((....))).))))).)))).))))))).((((((........)))))).)))..((((....)))).. ( -31.10)
>consensus
ACUGAG____AAGCAUUCCCUUCUUGGCCUCCUAUUUUUAGCCGCUCGUUGACGAAGGUUGCGUGGUAGGCCAAAUUGGCUUUUAAUCAAGCCAAAGGACAUCGAAAGCCC_AAA
................(((....(((((((.((((...(((((..(((....))).))))).)))).))))))).(((((((......))))))).)))................ (-26.42 = -26.90 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:04 2006