Locus 7467

Sequence ID 3L_DroMel_CAF1
Location 20,029,202 – 20,029,297
Length 95
Max. P 0.974233
window12139

overview

Window 9

Location 20,029,202 – 20,029,297
Length 95
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.35
Mean single sequence MFE -32.70
Consensus MFE -19.64
Energy contribution -20.28
Covariance contribution 0.64
Combinations/Pair 1.33
Mean z-score -2.17
Structure conservation index 0.60
SVM decision value 1.73
SVM RNA-class probability 0.974233
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20029202 95 - 23771897
UGAGCAUAUGGUC-GAGUAAUUAUCCUGUUGCU--CCGGCCA--------GCAUCUCGGCUAAGC-CAUCCACCACCGAGGUGCCCU-GCUUGAGCU------------CCGCUGCCUAU
.((((...(((((-(((((((......))))))--.))))))--------(((((((((......-.........)))))))))...-......)))------------).......... ( -34.06)
>DroSec_CAF1 20956 95 - 1
UGAGCAUAUGGUC-GAGUAAUUAUCCUGUUGCU--CCGGCCA--------GCAUCUCGGCUAAGC-CAUCCACCACCGAGGUGCCCU-GCUUGAGCU------------CCGCUGCCUAU
.((((...(((((-(((((((......))))))--.))))))--------(((((((((......-.........)))))))))...-......)))------------).......... ( -34.06)
>DroSim_CAF1 16042 95 - 1
UGAGCAUAUGGUC-GAGUAAUUAUCCUGUUGCU--CCGGCCA--------GCAUCUCGGCUAAGC-CAUCCACCACCGAGGUGCCCU-GCUUGAGCU------------UAGCUGCCUAU
.(((....(((((-(((((((......))))))--.))))))--------....)))((((((((-((..((.(((....)))...)-)..)).)))------------)))))...... ( -34.90)
>DroYak_CAF1 22630 95 - 1
UGAGCAUAUGGUC-GAGUAAUUAUCCUGUUGCU--CCGGCCG--------GCAUCUCGGCUAAGC-CAUCCACCACCGAGGUGCCCU-GCUUGAGCU------------CCGCUGCCUAU
.((((....((((-(((((((......))))))--.)))))(--------(((((((((......-.........))))))))))..-......)))------------).......... ( -36.46)
>DroMoj_CAF1 117931 115 - 1
UGAGCAUAUGGCAAGGAUAAUUAUCCUGUUGCUUUCUGGCAAAGUCUCAUGCAGCUCGGUUU--U-CAUUUACUAC-GCUCAGCCCA-GCUUGGUCGCCCCACUUCAGGCUGAUGCUUAU
(((((((..(((.(((((....))))).(((((....))))).......((.(((..(((..--.-.....)))..-))))))))((-((((((..........))))))))))))))). ( -34.10)
>DroPer_CAF1 21139 91 - 1
UGAGCAUAUGGUG-GCAUAAUUAUCUUGUUGCC--UUCGCCA--------GCAUCUCGGCUUAUCCCAUCC---ACCGUAGUGCCCUUACUCGUGCG------------GCGUUCCC---
.((((.(((((((-(..((((......))))..--...(((.--------.......))).........))---))))))..((((........).)------------))))))..--- ( -22.60)
>consensus
UGAGCAUAUGGUC_GAGUAAUUAUCCUGUUGCU__CCGGCCA________GCAUCUCGGCUAAGC_CAUCCACCACCGAGGUGCCCU_GCUUGAGCU____________CCGCUGCCUAU
.((((...(((((..((((((......))))))....)))))........(((((((((................)))))))))....)))).(((...............)))...... (-19.64 = -20.28 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:54 2006