Locus 7466

Sequence ID 3L_DroMel_CAF1
Location 20,028,544 – 20,028,647
Length 103
Max. P 0.818354
window12138

overview

Window 8

Location 20,028,544 – 20,028,647
Length 103
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 76.13
Mean single sequence MFE -20.72
Consensus MFE -14.64
Energy contribution -15.44
Covariance contribution 0.80
Combinations/Pair 1.08
Mean z-score -1.54
Structure conservation index 0.71
SVM decision value 0.67
SVM RNA-class probability 0.818354
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20028544 103 - 23771897
CGUGCGUUGACCCCCCCCCCCCACCCCCCUUCAGAAUG--UGUGCGAAAUUAACAAAUAAGCGUAUAAAUUAUGCCACAACACGCUGGCAGCGCACUCUCACACA------
.((((((((.((......................(((.--((((((...(((.....))).)))))).)))..((........)).)))))))))).........------ ( -20.70)
>DroSec_CAF1 20225 102 - 1
CAUGCGUCCCUCUC-UUCCCCCCCCCCCCCCCACAAUG--UGUGCGAAAUUAACAAAUAAGCGUAUAAAUUAUGCCACAACACGCUGGCAGCGCACGCUCACACA------
..............-.....................((--((.(((...(((.....)))((((........(((((........))))))))).))).))))..------ ( -17.30)
>DroSim_CAF1 15362 99 - 1
CAUGCGUCUCUCUC-UUCUCCCU---CCCCACAGAAUG--UGUGCGAAAUUAACAAAUAAGCGUAUAAAUUAUGCCACAACACGCUGGCAGCGCACGCUCACACA------
..............-........---.......((.((--(((((.......((........))........(((((........)))))))))))).)).....------ ( -17.60)
>DroYak_CAF1 22017 100 - 1
CGUGCGUCCUUCUC-UUC--------CCCUACGGAAUG--UGUGCGAAAUUAACAAAUAAGCGUAUAAAUUAUGCCACAACACGCUGGCAGCGCACGCUCACACACACACA
.(((.((.......-(((--------(.....))))((--((.(((...(((.....)))((((........(((((........))))))))).))).)))).)).))). ( -23.60)
>DroPer_CAF1 20490 95 - 1
UGUGCCUGUCAGU---------------CCUUGGAAUGGGUGUGCAAAAUUAACAAAUAAGCGUAUAAAUUAUGCCACA-CACGCUGACAACGCACACAUACUCGUACUUG
(((((.(((((((---------------((.......))(((((.....(((.....)))(((((.....)))))..))-))))))))))..))))).............. ( -24.40)
>consensus
CGUGCGUCCCUCUC_UUC_CCC____CCCCACAGAAUG__UGUGCGAAAUUAACAAAUAAGCGUAUAAAUUAUGCCACAACACGCUGGCAGCGCACGCUCACACA______
(((((((...........................(((...((((((...(((.....))).)))))).))).(((((........)))))))))))).............. (-14.64 = -15.44 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:53 2006