Locus 7456

Sequence ID 3L_DroMel_CAF1
Location 20,014,047 – 20,014,155
Length 108
Max. P 0.821538
window12115

overview

Window 5

Location 20,014,047 – 20,014,155
Length 108
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 80.58
Mean single sequence MFE -27.47
Consensus MFE -18.62
Energy contribution -18.76
Covariance contribution 0.14
Combinations/Pair 1.22
Mean z-score -1.90
Structure conservation index 0.68
SVM decision value 0.68
SVM RNA-class probability 0.821538
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20014047 108 + 23771897
AUA-UACUCAUUCGAUUGAGAGCUGCGGCGGGUUAAUUUAUUU-----ACAUGAUUUAUA---UGCCCUGCAACUAAUUAGAGAGU-UAUUUCCAUUUG-GCUCUCGAUGCACACGAAU
...-..((((......)))).(.((((((((((......(((.-----....))).....---.)))).)).........((((((-((........))-))))))..)))))...... ( -25.20)
>DroPse_CAF1 6402 118 + 1
AUA-UAUUCAUAGCAUAGGAUGUUGCGGCGCACUUACUUAUUUGCCUUAUAUGAUUUAUAGUUUUCGCAGCAACUAAUUAGAGAGUUUAUUCCCAUUUAAGCUCUCACUGCACCCGAUU
...-........((((((..((((((((((............))))(((((.....))))).....)))))).)))....(((((((((........)))))))))..)))........ ( -28.10)
>DroSec_CAF1 6067 108 + 1
AUA-UACCCAAUCGAUUGAGAGCUGCGGCGGGCUAAUUUAUUU-----ACAUGAUUUAUA---UGCCCGGCAACUAAUUAGAGAGU-UAUUUCCAUUUG-UCUCUCGAUGCACACGAAU
...-.......(((((((((((..(((.(((((......(((.-----....))).....---.))))).).........((((..-..)))).....)-))))))))).....))).. ( -22.90)
>DroEre_CAF1 5974 109 + 1
AUGUUACUCAUUCAAUUGAGAGCUGCGGCGGGCUAGUUUAUUU-----ACAUGAUUUAUA---UGCCCGGCAACUAAUUAGAGAGU-UAUUUCCAUUUG-GCUCUCGAUGCACACGAAU
..(((.((((......)))))))((((.(((((..((..(((.-----....)))..)).---.))))).).........((((((-((........))-))))))...)))....... ( -30.50)
>DroYak_CAF1 7418 104 + 1
-----UCUCAUUGAAUUGAGAGCUGCGGCGGGCUAAUUUAUUU-----ACAUGAUUUAUA---UGCCCGGCAACUAAUUAGAGAGU-UAUUUCCAUUUG-GCUCUCAAUGCACACGAAU
-----(((((......)))))(.((((.(((((......(((.-----....))).....---.))))).).........((((((-((........))-))))))...))))...... ( -30.40)
>DroPer_CAF1 5544 118 + 1
AUA-UAUUCAUAGCAUAGGAGGUUGCGGCGCACUUACUUAUUUGCCUUAUAUGAUUUAUAGUUUUCGCAGCAACUAAUUAGAGAGUUUAUUCCCAUUUAAGCUCUCACUGCACCCGAUU
...-........((((((...(((((((((............))))(((((.....))))).....)))))..)))....(((((((((........)))))))))..)))........ ( -27.70)
>consensus
AUA_UACUCAUUCAAUUGAGAGCUGCGGCGGGCUAAUUUAUUU_____ACAUGAUUUAUA___UGCCCGGCAACUAAUUAGAGAGU_UAUUUCCAUUUG_GCUCUCAAUGCACACGAAU
......((((......))))...((((((((((...............................)))).)).........(((((((((........)))))))))..))))....... (-18.62 = -18.76 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:33 2006