Locus 7455

Sequence ID 3L_DroMel_CAF1
Location 20,012,052 – 20,012,143
Length 91
Max. P 0.594137
window12114

overview

Window 4

Location 20,012,052 – 20,012,143
Length 91
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 90.12
Mean single sequence MFE -19.38
Consensus MFE -16.00
Energy contribution -16.12
Covariance contribution 0.12
Combinations/Pair 1.07
Mean z-score -1.47
Structure conservation index 0.83
SVM decision value 0.12
SVM RNA-class probability 0.594137
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20012052 91 - 23771897
AAUCCCUGGAUAAAUGCGUUCAUAAAAAGAAUGUCAAAACAAAAAGUUGUUAACUGGCAAUUUUUCUUGUUUCC--------ACGUUGUUGUUAUCCCC
.......(((((((((....)))...((.(((((..(((((((((((((((....)))))))))..))))))..--------))))).)).)))))).. ( -17.60)
>DroSec_CAF1 4051 94 - 1
AAUCCCUGGAUAAAUGCGUUCAUAAAAAGAAGGGCAAAACAAAAAAUUGUUAACUGGCAAUUUUUCUUGUUUCC-----CACGCGCUGUUGUUAUCCCC
.......((((((..((((((.......)).(((..(((((((((((((((....)))))))))..))))))))-----)..)))).....)))))).. ( -22.40)
>DroEre_CAF1 4112 99 - 1
AAUCCCUGGAUAAAUGCGUUCAUAAAAAGAAUGGCAAAACGAAAAAUUGUUAACUGGCAAUUUUUCUUGUUUCCACGUUUCCACGUUGUUGUUUUCCCC
.......(((....(((((((.......)))).)))(((((((((((((((....)))))))))))........((((....))))....))))))).. ( -17.90)
>DroYak_CAF1 4965 98 - 1
AAUCCCUGGAUAAAUGCGUUCAUAAAAAGAAUGGCAAAACAAAAAAUUGUUAACUGGCAAUUUUUCUUGUUUUCUUGU-CCCACGUUGUUGUUAUCCCC
.......((((((..((((.......(((((.(((((....((((((((((....)))))))))).))))))))))..-...)))).....)))))).. ( -19.60)
>consensus
AAUCCCUGGAUAAAUGCGUUCAUAAAAAGAAUGGCAAAACAAAAAAUUGUUAACUGGCAAUUUUUCUUGUUUCC_____CCCACGUUGUUGUUAUCCCC
.......((((((.(((((((.......))))).))(((((((((((((((....)))))))))..))))))...................)))))).. (-16.00 = -16.12 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:31 2006