Locus 7453

Sequence ID	3L_DroMel_CAF1
Location	20,008,192 – 20,008,285
Length	93
Max. P	0.532147

overview

Window 1

Location	20,008,192 – 20,008,285
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	85.27
Mean single sequence MFE	-37.02
Consensus MFE	-26.32
Energy contribution	-28.60
Covariance contribution	2.28
Combinations/Pair	1.11
Mean z-score	-1.61
Structure conservation index	0.71
SVM decision value	-0.00
SVM RNA-class probability	0.532147
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20008192 93 - 23771897
UCCUUAGCGGGCGCGGCAUUAACGCCGCCCUGGUGCACGGUGGCGACCAUCAGAUGCACCAGCUGCAGCCGUCACACCAUCAACAGGUGGAGC
......((.((((((((......))))).((((((((((((((...))))).).)))))))).....)))......(((((....))))).)) ( -39.70)
>DroPse_CAF1 241 87 - 1
UUCUCAGUGGACGCAGCAUCAACGCCGCCCUCGUCCAUGGCGGGGAGCACCACCAGCAGCAUCUCCAGCAGCCG------CAGCAGGUGGAGC
.((((.((((((((.((......)).))....))))))....))))((.(((((.((.((..((.....))..)------).)).))))).)) ( -28.80)
>DroSec_CAF1 268 93 - 1
UCCUCAGCGGACGCGGCAUUAACGCCGCCCUGGUGCACGGUGGCGACCAUCAGAUGCACCAGCUGCAGCCGUCACACCAUCAACAGGUGGAGC
..(((.((((..(((((......))))).((((((((((((((...))))).).))))))))))))........((((.......))))))). ( -40.10)
>DroEre_CAF1 393 93 - 1
UCCUCAGCGGACGCGGCAUUAACGCCGCCCUGGUGCACGGUGGCGACCACCAGCUGCACCAGCUGCAGCCGUCCCACCAUCAACAGGUGGAGC
......((((..(((((......))))).((((((((((((((...))))).).))))))))))))....(..(((((.......)))))..) ( -44.20)
>DroYak_CAF1 1059 93 - 1
UCCUCAGUGGACGCGGCAUUAACGCCGCCCUGGUACACGGUGGAGACCACCAGAUGCACCAGCUGCAGCCGUCACACCAUCAGCAAGUGGAGC
..(((.(((((((((((......))))).(((((.((((((((...))))).).)).)))))........))).)))(((......)))))). ( -32.30)
>consensus
UCCUCAGCGGACGCGGCAUUAACGCCGCCCUGGUGCACGGUGGCGACCACCAGAUGCACCAGCUGCAGCCGUCACACCAUCAACAGGUGGAGC
..(((.((((..(((((......))))).((((((((.((((.....))))...))))))))))))........((((.......))))))). (-26.32 = -28.60 +   2.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:29 2006