Locus 7452

Sequence ID 3L_DroMel_CAF1
Location 20,005,981 – 20,006,100
Length 119
Max. P 0.656022
window12110

overview

Window 0

Location 20,005,981 – 20,006,100
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 87.27
Mean single sequence MFE -31.36
Consensus MFE -24.40
Energy contribution -24.22
Covariance contribution -0.18
Combinations/Pair 1.17
Mean z-score -1.62
Structure conservation index 0.78
SVM decision value 0.26
SVM RNA-class probability 0.656022
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20005981 119 + 23771897
AAUGCAAACAAGAACAUCCUCUGGCUAGUUGGUAUUUCACUGGGUACUUUUGAGUACUCUGCCCCAGAUUGAGGAAAGCCACUGAGAAGUGCACAUAUGUGCAUUAAAUGCCACUACUA
...((.....(((......))).))((((.(((((((((.((((((((....)))))((((...))))..........))).)))))(((((((....)))))))...))))))))... ( -29.40)
>DroSec_CAF1 96207 118 + 1
AAUGCAAACAAGAACAUCCUCUGGCUAGUUGGUAUUUCACUGGGCACUUUUGAGUGCUCUGUCCCAGAUUGAGGAAAGCCACUGAGAAGUGCACAUAUGUGCAUUAAAUGCAACUACU-
..((((............((((((((...............(((((((....)))))))..((((.....).))).)))))..))).(((((((....)))))))...))))......- ( -33.50)
>DroSim_CAF1 55212 118 + 1
AAUGCAAACAAGAACAUCCUCUGGCUAGUUGGUAUUUCACUGGGUACUUUUGAGUACUCUGUCCCAGAUUGAGGAAAGCCACUGAGAAGUGCACAUAUGUGCAUUAAAUGCAACUACU-
..((((............((((((((...............(((((((....)))))))..((((.....).))).)))))..))).(((((((....)))))))...))))......- ( -31.50)
>DroEre_CAF1 46579 110 + 1
AAUGCAAACAAGAACAUCCUCUGGCUAGUUGAUAUUUCACUGAGUGC------CUACUCCGUCCCAGAUGGAGGAAAGCCACUG-GAUGGGCACAUAUGUGUGUUAAAUGCUGCUUC--
...(((........(((((..((((((((.((....)))))......------...(((((((...)))))))...)))))..)-))))((((((....))))))...)))......-- ( -34.30)
>DroYak_CAF1 52450 110 + 1
AAUGCAAACAAGAACAUCCUCUGGCUAGUUGAUAUUUCACUGAGUGC------AUACUCUGUCCCAGAUGG--GGAAGCCACUGAGAUGUGCACAUCUGUGUAUUAAAUGCUUCUACU-
...(((.......((((((..((((((((.((....)))))((((..------..))))..((((.....)--))))))))..).)))))((((....))))......))).......- ( -28.10)
>consensus
AAUGCAAACAAGAACAUCCUCUGGCUAGUUGGUAUUUCACUGGGUACUUUUGAGUACUCUGUCCCAGAUUGAGGAAAGCCACUGAGAAGUGCACAUAUGUGCAUUAAAUGCAACUACU_
...(((..........(((..((((((((.((....)))))(((((((....))))))).................)))))..).))(((((((....)))))))...)))........ (-24.40 = -24.22 +  -0.18)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:28 2006