| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,233,292 – 2,233,385 |
| Length | 93 |
| Max. P | 0.572627 |
| Location | 2,233,292 – 2,233,385 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.56 |
| Mean single sequence MFE | -26.72 |
| Consensus MFE | -19.38 |
| Energy contribution | -19.55 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2233292 93 - 23771897 AGUGGUGGUCAGAUGCGUGUAGUUCACCAUGUCUGCUACCAAAAUGGAAACAUUCGGGUAGGGUUCCAGGAACAGUUUUCUGCA-------------AUUAAAACU .(((((((.((......))....))))))).....(((((..((((....))))..)))))((((.((((((....)))))).)-------------)))...... ( -25.90) >DroSec_CAF1 14224 93 - 1 AGUGGUGGUCAGAUGCGUGUAGUUCACCAUGUCUGCUACCAAAAUGGAAACAUCCGGGUAGGGUUCCAAGAACAGUUUCCUACA-------------AUUAAAACU ..((((((.(((((..(((.....)))...)))))))))))....((((((..((.....))((((...)))).))))))....-------------......... ( -27.00) >DroSim_CAF1 14300 93 - 1 AGUGGUGGUCAGAUGCGUGUAGUUCACCAUGUCUGCUACCAAAAUGGAAACAUCGGGAUAGGGUUCCAAGAACAGUUUCCUACA-------------AUUGAAACU ..((((((.(((((..(((.....)))...)))))))))))..(((....))).((((....((((...))))....))))...-------------......... ( -25.80) >DroEre_CAF1 27295 97 - 1 AGUGGUGGUCAGCUGCGUGUAGUUCACCAUGUCUGCCACCAAAAUGGAAACAUCCGGGUAGGGUUCCAAAAACAGUUUCCUACUUAAGACACCACCA--------- .((((((((.(((((....))))).)))..((((....((...(((....)))..))((((((..(........)..))))))...)))))))))..--------- ( -30.70) >DroYak_CAF1 14769 106 - 1 AGUGGUGGUCAGGUGCGUGUAGUUCACCAUGUCUGCUACCAAAAUGGAAACAUCCGGGUAUGGUUCCAAGAACAGCUUUCUACAUAGGGUAUCACAAAUUUAAGCU .((((((.((.((((.........))))((((..((((((...(((....)))...)))...((((...))))))).....)))).)).))))))........... ( -25.30) >DroPer_CAF1 11997 92 - 1 GGUGUUGGUCAGGUUCGUGUAGUGCACCAUGUCGGCUACCAGUAUGGACACAUCCGGGUGGGGUUCCACAAAGAGUUUGCUGCA-------------GGCGGA-UC (((((....((......))....)))))..(((.(((..(((((((((....)))).((((....))))........)))))..-------------))).))-). ( -25.60) >consensus AGUGGUGGUCAGAUGCGUGUAGUUCACCAUGUCUGCUACCAAAAUGGAAACAUCCGGGUAGGGUUCCAAGAACAGUUUCCUACA_____________AUUAAAACU ..((((((.(((((..(((.....)))...)))))))))))..(((....)))....((((((..(........)..))))))....................... (-19.38 = -19.55 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:04 2006