Locus 7448

Sequence ID 3L_DroMel_CAF1
Location 20,003,682 – 20,003,790
Length 108
Max. P 0.942473
window12102

overview

Window 2

Location 20,003,682 – 20,003,790
Length 108
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 75.17
Mean single sequence MFE -20.85
Consensus MFE -15.52
Energy contribution -16.52
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.74
SVM decision value 1.33
SVM RNA-class probability 0.942473
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20003682 108 + 23771897
UGUAUGUUCCAUUCUUCUGCACAGCACUUGGCUCUUUUUUCCAUAUCAGC-CACUCUGAUAAUUGGAAAAUCUGUGGUAAAUCUGGUAGCCAGCUGCCACACUAUCGAU
......................(((.....)))...(((((((((((((.-....))))))..)))))))..(((((((...((((...)))).)))))))........ ( -23.80)
>DroSec_CAF1 94006 89 + 1
UGAAUGUUCCAUUCAU------------------UUUUUU-CAUCUCAGC-CACUCUGAUAAUUGGAAAAUCUGUGGUAAAUCUGCUAGCCAGCUGCCACACUAUCGAU
((((((...)))))).------------------.(((((-((..((((.-....))))....)))))))..(((((((...(((.....))).)))))))........ ( -17.90)
>DroSim_CAF1 52933 90 + 1
UGUAUGUUCCAUUCAU------------------UUUUUUCCAUCUCAGC-CACUCUGAUAAUUGGAAAAUCUGUGGUAAAUCUGCUAGCCAGCUGCCACACUAUCGAU
............((..------------------..(((((((..((((.-....))))....)))))))..(((((((...(((.....))).))))))).....)). ( -17.90)
>DroEre_CAF1 44408 96 + 1
------------UCCAAUGCUCCGCAUUCGCCUCUUUUUUCCAUCGCAGG-CACUCUGAUAAUUGGAAAAUCUGUGGUAAAUCUGGGAGCCAGCUGCCACACUAUCGAU
------------......(((((..(((..((.(..(((((((...(((.-....))).....)))))))...).))..)))...)))))................... ( -22.60)
>DroYak_CAF1 50048 97 + 1
C-----------UCCGCUGCUCCGCAUUUCCAUCUU-UUUCCAUCUCAAACCACUCCGAUAAUUGGAAAAUCUGUGGUAAAUCUGGAAGCCAGCUGCCACACUAUCGAU
.-----------...(((((((((.((((((((..(-((((((....................)))))))...)))).)))).))).)).))))............... ( -22.05)
>consensus
UG_AUGUUCCAUUCAU_UGC_C_GCA_U____UCUUUUUUCCAUCUCAGC_CACUCUGAUAAUUGGAAAAUCUGUGGUAAAUCUGGUAGCCAGCUGCCACACUAUCGAU
....................................(((((((..((((......))))....)))))))..(((((((...(((.....))).)))))))........ (-15.52 = -16.52 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:20 2006