Locus 7445

Sequence ID 3L_DroMel_CAF1
Location 20,002,102 – 20,002,202
Length 100
Max. P 0.678669
window12097

overview

Window 7

Location 20,002,102 – 20,002,202
Length 100
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 88.44
Mean single sequence MFE -30.90
Consensus MFE -24.24
Energy contribution -24.27
Covariance contribution 0.03
Combinations/Pair 1.13
Mean z-score -2.55
Structure conservation index 0.78
SVM decision value 0.30
SVM RNA-class probability 0.678669
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20002102 100 - 23771897
AUGAAAAUUGUCCAUAAAAGCG--AGCCAAGUUUAUGCUCCAUUAAAUGCCAUAAAAGGCGUUUGCCAUGACUUAUAUGUGAGGAACGUGGCA------------------GACAGUGGU
...........((((....(.(--(((.........))))).......(((......)))((((((((((.((((....))))...)))))))------------------))).)))). ( -28.80)
>DroSec_CAF1 92481 100 - 1
AUGGAAAUUGUCCAUAAAAGCG--AGCCAAGUUUAUGCUCCAUUAAAUGCCAAAAAAGGCGUUUGCCAUGACUUAUAUGUGAGGAACGUGGCG------------------GACAGUGGU
......(((((((......(.(--(((.........)))))...(((((((......)))))))((((((.((((....))))...)))))))------------------))))))... ( -32.10)
>DroSim_CAF1 51421 100 - 1
AUGGAAAUUGUCCAUAAAAGCG--AGCCAAGUUUAUGCUCCAUUAAAUGCCAUAAAAGGCGUUUGCCAUGACUUAUAUGUGAGGAACGUGGCG------------------GACAGUGGU
......(((((((......(.(--(((.........)))))...(((((((......)))))))((((((.((((....))))...)))))))------------------))))))... ( -32.10)
>DroEre_CAF1 42900 100 - 1
AUGAAAAUUGUCUAUAAAAGCG--AGCCAAGUUUAUGCUCCAUUAAAUGCCAUAAAAGGCGUUUGCCAUGACUUAUAUGUGCGAAACGUGGCA------------------GACAGUGGU
......(((((((......(.(--(((.........)))))...(((((((......)))))))((((((................)))))))------------------))))))... ( -25.69)
>DroYak_CAF1 48449 100 - 1
AUGAAAAUUGUCUAUAAAAGCG--AGCCAAGUUUAUGCUCCAUUAAAUGCCAUAAAAGGCGUUUGCCAUGACUUAUAUGUGAGGAACGUGGCA------------------GGCAGUGGU
......(((((((......(.(--(((.........)))))...(((((((......)))))))((((((.((((....))))...)))))))------------------))))))... ( -28.80)
>DroAna_CAF1 46848 120 - 1
AUGGAAAUUGUCUAUAAAGGAGACAGUCCAGUUUAUGCACCAUUAAAUGCCAUAAAAGGCGUUUGCCAUGACUUAUAUGCGAGGAACGUGGCAGUGGCAGUGGCAGUGGCAGCCAAUGGU
.((((...(((((.......))))).))))........((((((...((((((..(..((..((((((((.(((......)))...))))))))..))..)....))))))...)))))) ( -37.90)
>consensus
AUGAAAAUUGUCCAUAAAAGCG__AGCCAAGUUUAUGCUCCAUUAAAUGCCAUAAAAGGCGUUUGCCAUGACUUAUAUGUGAGGAACGUGGCA__________________GACAGUGGU
......((((((((((((.((....))....)))))).......(((((((......)))))))((((((.((((....))))...))))))...................))))))... (-24.24 = -24.27 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:16 2006