| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,000,637 – 20,000,850 |
| Length | 213 |
| Max. P | 0.921445 |
| Location | 20,000,637 – 20,000,731 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 69.43 |
| Mean single sequence MFE | -23.77 |
| Consensus MFE | -11.82 |
| Energy contribution | -12.20 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.50 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.921445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20000637 94 - 23771897 AUAAAUGCGAACGCAGAUGAGUUUUUCAUUCUGUGUGAAUACGAGUUAGUGCGGAAUGGCGACUUUUUGAUGUUCUUUGAAAAGU--------AC------GCAUUA-----A ...((((((..((((((......)))(((((((..(.(((....))).)..))))))))))((((((..(......)..))))))--------.)------))))).-----. ( -26.00) >DroSec_CAF1 91001 93 - 1 AUAAAUGCGAACACAGAUGAGUUUUUCAUUCUGUGUGAAUACGAGU---------ACGGCGACUUUUUGAUGUUCUUUGAAAAGUGCUAAAAUAA------GCAGAA-----A .....(((..(((((((((((...)))).)))))))..........---------..(((.((((((..(......)..))))))))).......------)))...-----. ( -23.10) >DroSim_CAF1 49936 93 - 1 AUAAAUGCGAGCGCAGAUGAGUUUUUCAUUCUGUGUGAAUACGAGU---------AAGGCGACUUUUUGAUGUUCUUUGAAAAGUGCUAAAAUAA------GCAGAA-----A .....(((..(((((((((((...)))).)))))))..........---------..(((.((((((..(......)..))))))))).......------)))...-----. ( -23.00) >DroEre_CAF1 41445 104 - 1 ACAAAUGUGAACGCGAAUGAGUUUUUCAUUCCUUUUCACUGGG--U----AAAGGAUGCAGACUUU-UGAUGUCCUUUAAAAAAUAUCAAGAGAAAAGCCCGCUU--AUUGUC ((((..(((((...(((((((...)))))))...))))).(((--(----(((((((((((....)-)).))))))))........((....))...))))....--.)))). ( -23.00) >consensus AUAAAUGCGAACGCAGAUGAGUUUUUCAUUCUGUGUGAAUACGAGU_________AUGGCGACUUUUUGAUGUUCUUUGAAAAGUGCUAAAAUAA______GCAGAA_____A .....(((..(((((((((((...)))).))))))).........................(((((((((......)))))))))................)))......... (-11.82 = -12.20 + 0.38)
| Location | 20,000,731 – 20,000,850 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 89.73 |
| Mean single sequence MFE | -20.95 |
| Consensus MFE | -18.84 |
| Energy contribution | -18.60 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.907597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20000731 119 + 23771897 GAUAAUAUUUCAGCGGUCUAUUGUAAUUUCCAUGGAAGGAUUUUCCUUUCACUUUCUUGUUUUCUUAUACGCCUUUUUAUCCUCUCACGUGAAAGUUUUUCGUGGCUUUUACUAUUUUU (((((.......(((..................((((((.....))))))((......)).........)))....))))).......(((((((((......)))))))))....... ( -19.70) >DroSec_CAF1 91094 117 + 1 GAUAAUAUUUCAGCGGUCUAUUGUAAUUUCCAUGGAAGGAUUUUCCUUUCACUUUCUUCUUUUCUCACACGCCUUUUUAUCCGCUCACGUGAAAGUUUUUCGCGGCUUUUACUACUU-- ...........(((((.....((.......))(((((((.....))))))).............................)))))...(((((((((......))))))))).....-- ( -20.30) >DroSim_CAF1 50029 117 + 1 GAUAAUAUUUCAGCGGUCUAUUGUAAUUUCCAUGGAAGGAUUUCCCUUUCACUUUCUUGUUUUCUCAUACGCCUUUUUAUCCGCUCACGUGAAAGUUUUUCGCGGCUUUUACUACUU-- ...........(((((................(((((((.....))))))).......((........))..........)))))...(((((((((......))))))))).....-- ( -21.30) >DroEre_CAF1 41549 116 + 1 GAUAAUAUUUCAGCGGUCUAUUGUAAUUUCCAUGAAGGGAUAUCCCUUUCACUUUCUUGUUUUCCCAUACGCUC-UUUAUCCCCUCACGUGAAAGUUUUUCGAGGCUGUUACCACUU-- ...........((((((((.......(((((.(((.((((((................................-..)))))).))).).))))........)))))))).......-- ( -21.24) >DroYak_CAF1 47019 117 + 1 GAUAAUAUUUCAGCGGUCUAUUGUAAUUUCCAUGAAGGGAUUUUCCUUUCACUUUCUUGUUGUUUCAUACGCUCCUUCAUCCUACCACGUGAAAGUUUUUCGUGGCUUUCACUACAU-- ...........((((.................(((((((.....)))))))......((......))..))))...............(((((((((......))))))))).....-- ( -22.20) >consensus GAUAAUAUUUCAGCGGUCUAUUGUAAUUUCCAUGGAAGGAUUUUCCUUUCACUUUCUUGUUUUCUCAUACGCCUUUUUAUCCGCUCACGUGAAAGUUUUUCGCGGCUUUUACUACUU__ (((((.......((((.............)).(((((((.....)))))))...................))....))))).......(((((((((......)))))))))....... (-18.84 = -18.60 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:15 2006